miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10787 5' -56.8 NC_002794.1 + 70298 0.66 0.917953
Target:  5'- -cGGGGGGGCCcggGCgcgaaGAGCcGCUUCg -3'
miRNA:   3'- guUCCCCCUGGa--CGag---UUCGuUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 16061 0.66 0.916259
Target:  5'- --cGGGGGACugCUGCUCAccaucggggucgugAGCGucacGCUCUa -3'
miRNA:   3'- guuCCCCCUG--GACGAGU--------------UCGU----UGGGG- -5'
10787 5' -56.8 NC_002794.1 + 88190 0.66 0.912227
Target:  5'- aAAGGGGGG-CUGCguuaCGGGCAGCg-- -3'
miRNA:   3'- gUUCCCCCUgGACGa---GUUCGUUGggg -5'
10787 5' -56.8 NC_002794.1 + 86819 0.66 0.911642
Target:  5'- cCAGGGccgcgaccucgccGGGAUCgGgUC-GGCGGCCCCg -3'
miRNA:   3'- -GUUCC-------------CCCUGGaCgAGuUCGUUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 51262 0.66 0.906272
Target:  5'- uGGGGGcGGGCCgggagGCagGcGCGGCCCg -3'
miRNA:   3'- gUUCCC-CCUGGa----CGagUuCGUUGGGg -5'
10787 5' -56.8 NC_002794.1 + 36803 0.66 0.906272
Target:  5'- cCGAGGucaGGugCUGCgagAGGUAGCCCUc -3'
miRNA:   3'- -GUUCCc--CCugGACGag-UUCGUUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 38251 0.66 0.906272
Target:  5'- -cAGcGGGGccuCCUGCgUgAGGCGcgGCCCCc -3'
miRNA:   3'- guUC-CCCCu--GGACG-AgUUCGU--UGGGG- -5'
10787 5' -56.8 NC_002794.1 + 41353 0.66 0.905663
Target:  5'- --cGGGGucaccgccgucGGCCUucgcGCUCGcggcgccuccuucGGCGGCCCCg -3'
miRNA:   3'- guuCCCC-----------CUGGA----CGAGU-------------UCGUUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 145735 0.66 0.900089
Target:  5'- gGAGGcGGcGgcGCCgGCaUCGacGGCGACCCCg -3'
miRNA:   3'- gUUCC-CC-C--UGGaCG-AGU--UCGUUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 115556 0.66 0.893683
Target:  5'- --cGGGGGAgUaGC-CGAGCAGCUCg -3'
miRNA:   3'- guuCCCCCUgGaCGaGUUCGUUGGGg -5'
10787 5' -56.8 NC_002794.1 + 52399 0.67 0.887055
Target:  5'- --cGGucGAcuaCCUGCUCGAGCAGCUCa -3'
miRNA:   3'- guuCCccCU---GGACGAGUUCGUUGGGg -5'
10787 5' -56.8 NC_002794.1 + 123208 0.67 0.880209
Target:  5'- gGAGauGGACCUGUacaucgucUCGAGCGGCCUg -3'
miRNA:   3'- gUUCccCCUGGACG--------AGUUCGUUGGGg -5'
10787 5' -56.8 NC_002794.1 + 37332 0.67 0.858413
Target:  5'- --cGGuGGGGCCcggGCggcagCAGGUcgGGCCCCa -3'
miRNA:   3'- guuCC-CCCUGGa--CGa----GUUCG--UUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 104900 0.67 0.850744
Target:  5'- gCGAGGcgccGugCUGCUCGAGCAGgCgCCg -3'
miRNA:   3'- -GUUCCcc--CugGACGAGUUCGUUgG-GG- -5'
10787 5' -56.8 NC_002794.1 + 112260 0.68 0.842884
Target:  5'- --cGGcGGGACCggcgucucguccucgGCcuccgugUCGGGCGGCCCCc -3'
miRNA:   3'- guuCC-CCCUGGa--------------CG-------AGUUCGUUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 92302 0.68 0.842884
Target:  5'- aCGAGGcGGGGCUggGCgCGGGCGGCgggggCCCg -3'
miRNA:   3'- -GUUCC-CCCUGGa-CGaGUUCGUUG-----GGG- -5'
10787 5' -56.8 NC_002794.1 + 12805 0.68 0.842884
Target:  5'- --cGGcccGGGGCCcgUGCUCGAGgucuACCCCg -3'
miRNA:   3'- guuCC---CCCUGG--ACGAGUUCgu--UGGGG- -5'
10787 5' -56.8 NC_002794.1 + 145512 0.68 0.834025
Target:  5'- gAAGGGGugcgcgaGGCCgGCcCGAGCGccucgggcGCCCCg -3'
miRNA:   3'- gUUCCCC-------CUGGaCGaGUUCGU--------UGGGG- -5'
10787 5' -56.8 NC_002794.1 + 108386 0.68 0.818222
Target:  5'- gGAGcGGGGAgCggagGCUCcggcGGCGGCgCCCa -3'
miRNA:   3'- gUUC-CCCCUgGa---CGAGu---UCGUUG-GGG- -5'
10787 5' -56.8 NC_002794.1 + 85202 0.68 0.809664
Target:  5'- --cGGGGGAcCCUGCgcccuaaAcuCGGCCCCg -3'
miRNA:   3'- guuCCCCCU-GGACGag-----UucGUUGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.