miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10787 5' -56.8 NC_002794.1 + 183603 0.75 0.461907
Target:  5'- gGAGGGGGGCCgcgcGCggCcGGCGcCCCCg -3'
miRNA:   3'- gUUCCCCCUGGa---CGa-GuUCGUuGGGG- -5'
10787 5' -56.8 NC_002794.1 + 178812 0.7 0.716904
Target:  5'- -cGGGGGGACCggGCacUCGGGUcuCCCg -3'
miRNA:   3'- guUCCCCCUGGa-CG--AGUUCGuuGGGg -5'
10787 5' -56.8 NC_002794.1 + 145735 0.66 0.900089
Target:  5'- gGAGGcGGcGgcGCCgGCaUCGacGGCGACCCCg -3'
miRNA:   3'- gUUCC-CC-C--UGGaCG-AGU--UCGUUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 145512 0.68 0.834025
Target:  5'- gAAGGGGugcgcgaGGCCgGCcCGAGCGccucgggcGCCCCg -3'
miRNA:   3'- gUUCCCC-------CUGGaCGaGUUCGU--------UGGGG- -5'
10787 5' -56.8 NC_002794.1 + 134202 0.7 0.707099
Target:  5'- -uGGuGGGGGCCgucggucGC-CAAGCGACCgCCg -3'
miRNA:   3'- guUC-CCCCUGGa------CGaGUUCGUUGG-GG- -5'
10787 5' -56.8 NC_002794.1 + 123809 0.69 0.755337
Target:  5'- uCGGGGGcgcGGACgaGCagGAGCGGCgCCCg -3'
miRNA:   3'- -GUUCCC---CCUGgaCGagUUCGUUG-GGG- -5'
10787 5' -56.8 NC_002794.1 + 123208 0.67 0.880209
Target:  5'- gGAGauGGACCUGUacaucgucUCGAGCGGCCUg -3'
miRNA:   3'- gUUCccCCUGGACG--------AGUUCGUUGGGg -5'
10787 5' -56.8 NC_002794.1 + 115556 0.66 0.893683
Target:  5'- --cGGGGGAgUaGC-CGAGCAGCUCg -3'
miRNA:   3'- guuCCCCCUgGaCGaGUUCGUUGGGg -5'
10787 5' -56.8 NC_002794.1 + 112260 0.68 0.842884
Target:  5'- --cGGcGGGACCggcgucucguccucgGCcuccgugUCGGGCGGCCCCc -3'
miRNA:   3'- guuCC-CCCUGGa--------------CG-------AGUUCGUUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 108386 0.68 0.818222
Target:  5'- gGAGcGGGGAgCggagGCUCcggcGGCGGCgCCCa -3'
miRNA:   3'- gUUC-CCCCUgGa---CGAGu---UCGUUG-GGG- -5'
10787 5' -56.8 NC_002794.1 + 104900 0.67 0.850744
Target:  5'- gCGAGGcgccGugCUGCUCGAGCAGgCgCCg -3'
miRNA:   3'- -GUUCCcc--CugGACGAGUUCGUUgG-GG- -5'
10787 5' -56.8 NC_002794.1 + 99460 0.69 0.755337
Target:  5'- --cGGGGGuAUCggcgGCUCAgagacacggggAGCGACUCCg -3'
miRNA:   3'- guuCCCCC-UGGa---CGAGU-----------UCGUUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 94295 0.69 0.755337
Target:  5'- --cGGGGGGCg-GCUCGGGC-GCgCCg -3'
miRNA:   3'- guuCCCCCUGgaCGAGUUCGuUGgGG- -5'
10787 5' -56.8 NC_002794.1 + 92302 0.68 0.842884
Target:  5'- aCGAGGcGGGGCUggGCgCGGGCGGCgggggCCCg -3'
miRNA:   3'- -GUUCC-CCCUGGa-CGaGUUCGUUG-----GGG- -5'
10787 5' -56.8 NC_002794.1 + 88190 0.66 0.912227
Target:  5'- aAAGGGGGG-CUGCguuaCGGGCAGCg-- -3'
miRNA:   3'- gUUCCCCCUgGACGa---GUUCGUUGggg -5'
10787 5' -56.8 NC_002794.1 + 86819 0.66 0.911642
Target:  5'- cCAGGGccgcgaccucgccGGGAUCgGgUC-GGCGGCCCCg -3'
miRNA:   3'- -GUUCC-------------CCCUGGaCgAGuUCGUUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 85202 0.68 0.809664
Target:  5'- --cGGGGGAcCCUGCgcccuaaAcuCGGCCCCg -3'
miRNA:   3'- guuCCCCCU-GGACGag-----UucGUUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 83467 1.11 0.002152
Target:  5'- cCAAGGGGGACCUGCUCAAGCAACCCCu -3'
miRNA:   3'- -GUUCCCCCUGGACGAGUUCGUUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 70298 0.66 0.917953
Target:  5'- -cGGGGGGGCCcggGCgcgaaGAGCcGCUUCg -3'
miRNA:   3'- guUCCCCCUGGa--CGag---UUCGuUGGGG- -5'
10787 5' -56.8 NC_002794.1 + 61110 0.7 0.716904
Target:  5'- gGAGaaaGGGGACCaGCUCGugcucuGCGcGCCCCu -3'
miRNA:   3'- gUUC---CCCCUGGaCGAGUu-----CGU-UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.