miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 3' -61.1 NC_002794.1 + 19970 0.65 0.761024
Target:  5'- gCUGcGGCCGCcCUucgggcuguccgucCUGGuGgCGCUGCg -3'
miRNA:   3'- aGAC-CCGGUGcGA--------------GACCuCgGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 137781 0.66 0.754621
Target:  5'- --gGGGUCGaggugcagguCGCUgaGGAGCCGCaggaagGCg -3'
miRNA:   3'- agaCCCGGU----------GCGAgaCCUCGGCGa-----CG- -5'
10788 3' -61.1 NC_002794.1 + 144763 0.66 0.754621
Target:  5'- uUCUGGGa-ACGCagCUGGccggcgucGCCGCUGg -3'
miRNA:   3'- -AGACCCggUGCGa-GACCu-------CGGCGACg -5'
10788 3' -61.1 NC_002794.1 + 101033 0.66 0.754621
Target:  5'- --cGGGCCGgGCgcgGGucGGCCGCUacuGCg -3'
miRNA:   3'- agaCCCGGUgCGagaCC--UCGGCGA---CG- -5'
10788 3' -61.1 NC_002794.1 + 12062 0.66 0.739808
Target:  5'- cUCUGGGCCGCGCcgccgaUgaacacgacgcugacCUGGAccgacgggacGCCGUgGCa -3'
miRNA:   3'- -AGACCCGGUGCG------A---------------GACCU----------CGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 105938 0.66 0.736069
Target:  5'- --cGGGCUggacGCGCUguacgaacggCUgGGGGCCGCcGCg -3'
miRNA:   3'- agaCCCGG----UGCGA----------GA-CCUCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 105469 0.66 0.736069
Target:  5'- uUCUGGgacgacgaGCCGuCGuCUCcggucgUGGAGCCGCcGCc -3'
miRNA:   3'- -AGACC--------CGGU-GC-GAG------ACCUCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 48056 0.66 0.730436
Target:  5'- gCUGGGCacgGCGCUgaUGGccggccagcgggagcAGCCGCcGCu -3'
miRNA:   3'- aGACCCGg--UGCGAg-ACC---------------UCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 10645 0.66 0.723829
Target:  5'- --gGGaGCgGCGCgagcccgacgagcgUCUGGAGCCGCcugaGCu -3'
miRNA:   3'- agaCC-CGgUGCG--------------AGACCUCGGCGa---CG- -5'
10788 3' -61.1 NC_002794.1 + 48888 0.66 0.717186
Target:  5'- -gUGGcaggccagcguuGCCGCaGCUC-GGGGCCGCUccGCa -3'
miRNA:   3'- agACC------------CGGUG-CGAGaCCUCGGCGA--CG- -5'
10788 3' -61.1 NC_002794.1 + 34812 0.66 0.717186
Target:  5'- --cGGGCCGCGCgacaccacccccUCgccGGcGCCGgaGCg -3'
miRNA:   3'- agaCCCGGUGCG------------AGa--CCuCGGCgaCG- -5'
10788 3' -61.1 NC_002794.1 + 85961 0.66 0.717186
Target:  5'- aCgGGGCCGCGgccCUCUcaucGGAccGCCGCgGCc -3'
miRNA:   3'- aGaCCCGGUGC---GAGA----CCU--CGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 22626 0.66 0.716235
Target:  5'- --cGGGCCgcucgagGCGCUC-GGA-CCGCUGa -3'
miRNA:   3'- agaCCCGG-------UGCGAGaCCUcGGCGACg -5'
10788 3' -61.1 NC_002794.1 + 147331 0.66 0.707641
Target:  5'- uUCgGGGCCGauCUCgugcGCCGCUGCc -3'
miRNA:   3'- -AGaCCCGGUgcGAGaccuCGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 111733 0.66 0.706683
Target:  5'- --cGGGCgaaCGCGCUCgucgagcUGGcGCCGCgcgGCg -3'
miRNA:   3'- agaCCCG---GUGCGAG-------ACCuCGGCGa--CG- -5'
10788 3' -61.1 NC_002794.1 + 58441 0.67 0.698036
Target:  5'- --cGaGGCCACGCUgcgcCUGGccgcgcuGgCGCUGCa -3'
miRNA:   3'- agaC-CCGGUGCGA----GACCu------CgGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 59147 0.67 0.695145
Target:  5'- --aGGGCCgcgucgcgcacgacACGCUgCUGGcgcAGCUGCUGg -3'
miRNA:   3'- agaCCCGG--------------UGCGA-GACC---UCGGCGACg -5'
10788 3' -61.1 NC_002794.1 + 62994 0.67 0.692249
Target:  5'- --cGGcGCCugGCacccccgcacguggCUGGAGCUGgUGCu -3'
miRNA:   3'- agaCC-CGGugCGa-------------GACCUCGGCgACG- -5'
10788 3' -61.1 NC_002794.1 + 106229 0.67 0.688382
Target:  5'- --cGcGGCCGCGCUCgGGucgcAGaCCGCcGCg -3'
miRNA:   3'- agaC-CCGGUGCGAGaCC----UC-GGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 110190 0.67 0.688382
Target:  5'- -aUGGGCCGCuGUUCgaacaaGGGGUCGCUc- -3'
miRNA:   3'- agACCCGGUG-CGAGa-----CCUCGGCGAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.