miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 3' -61.1 NC_002794.1 + 81882 1.11 0.000926
Target:  5'- cUCUGGGCCACGCUCUGGAGCCGCUGCu -3'
miRNA:   3'- -AGACCCGGUGCGAGACCUCGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 91084 0.76 0.230776
Target:  5'- -gUGGGCUACggGCUCaaGGAGCUGCUGUa -3'
miRNA:   3'- agACCCGGUG--CGAGa-CCUCGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 123272 0.74 0.316784
Target:  5'- gUCcGGGCCGCGgUCgucgcgGGAGaCCuGCUGCu -3'
miRNA:   3'- -AGaCCCGGUGCgAGa-----CCUC-GG-CGACG- -5'
10788 3' -61.1 NC_002794.1 + 58753 0.73 0.323773
Target:  5'- --cGGGCagCugGCggaGGAGCCGCUGCu -3'
miRNA:   3'- agaCCCG--GugCGagaCCUCGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 58627 0.72 0.375879
Target:  5'- cCUGGugcgccugaucGCCACGCagCUGGgcgacgGGCUGCUGCa -3'
miRNA:   3'- aGACC-----------CGGUGCGa-GACC------UCGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 12607 0.72 0.383771
Target:  5'- gCUGcGCCaccaGCGCgUCUGGGGCCGCUucgaGCa -3'
miRNA:   3'- aGACcCGG----UGCG-AGACCUCGGCGA----CG- -5'
10788 3' -61.1 NC_002794.1 + 83959 0.72 0.390967
Target:  5'- cCUGGGCCgccuggaGCGC-CUGGA-CCGCcGCg -3'
miRNA:   3'- aGACCCGG-------UGCGaGACCUcGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 155514 0.72 0.408094
Target:  5'- --cGGGCCGCcuguuccagucgGgUUUGGAGCUGUUGCa -3'
miRNA:   3'- agaCCCGGUG------------CgAGACCUCGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 119389 0.71 0.424837
Target:  5'- gCUGGGCCA-GCacCUGGcGCCGCaGCc -3'
miRNA:   3'- aGACCCGGUgCGa-GACCuCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 152096 0.71 0.424837
Target:  5'- cCUGGGauaC-CGCcgUCUGGGGCUuGCUGCg -3'
miRNA:   3'- aGACCCg--GuGCG--AGACCUCGG-CGACG- -5'
10788 3' -61.1 NC_002794.1 + 102647 0.71 0.424837
Target:  5'- gCUGGcGgCGCGCUCggaGGAGCUGCcgaGCg -3'
miRNA:   3'- aGACC-CgGUGCGAGa--CCUCGGCGa--CG- -5'
10788 3' -61.1 NC_002794.1 + 94968 0.7 0.495633
Target:  5'- cCUGGaGCCgACGCgggggCUGGAgcucugucGCCGCUuGCu -3'
miRNA:   3'- aGACC-CGG-UGCGa----GACCU--------CGGCGA-CG- -5'
10788 3' -61.1 NC_002794.1 + 146489 0.7 0.495633
Target:  5'- gUCUGGaGCCcgucgaGCUCgcGGAGCCcCUGCu -3'
miRNA:   3'- -AGACC-CGGug----CGAGa-CCUCGGcGACG- -5'
10788 3' -61.1 NC_002794.1 + 154186 0.7 0.514172
Target:  5'- aUCaGGGCCGcCGacgaUCUGGAGaCGCUGg -3'
miRNA:   3'- -AGaCCCGGU-GCg---AGACCUCgGCGACg -5'
10788 3' -61.1 NC_002794.1 + 91248 0.69 0.532987
Target:  5'- --cGGGCUGCGCUCgcGGAcGCCGUUcGUg -3'
miRNA:   3'- agaCCCGGUGCGAGa-CCU-CGGCGA-CG- -5'
10788 3' -61.1 NC_002794.1 + 123953 0.69 0.561649
Target:  5'- gUCUGaGCCGCGCgCaGGAGCCGUa-- -3'
miRNA:   3'- -AGACcCGGUGCGaGaCCUCGGCGacg -5'
10788 3' -61.1 NC_002794.1 + 93700 0.69 0.571299
Target:  5'- cCU-GGCCACGCgcCUGGucgaccuGCUGUUGCg -3'
miRNA:   3'- aGAcCCGGUGCGa-GACCu------CGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 137584 0.69 0.571299
Target:  5'- --gGGGCCGgagUGCgg-GGAGCCGCcGCc -3'
miRNA:   3'- agaCCCGGU---GCGagaCCUCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 149675 0.68 0.590713
Target:  5'- --gGGGCgcguCGCGCUCgacuggccgcgGGGGCCGCcugGCg -3'
miRNA:   3'- agaCCCG----GUGCGAGa----------CCUCGGCGa--CG- -5'
10788 3' -61.1 NC_002794.1 + 87377 0.68 0.610237
Target:  5'- uUCUGGGCgGCGCggccagaGcGAGCCGCa-- -3'
miRNA:   3'- -AGACCCGgUGCGaga----C-CUCGGCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.