miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 3' -61.1 NC_002794.1 + 145845 0.68 0.610237
Target:  5'- --cGGucGCCACGCUCgacGAGCCGCcgaggGCc -3'
miRNA:   3'- agaCC--CGGUGCGAGac-CUCGGCGa----CG- -5'
10788 3' -61.1 NC_002794.1 + 120799 0.68 0.639619
Target:  5'- --aGGGUgACGuUUUUGGAGCggcaGCUGCg -3'
miRNA:   3'- agaCCCGgUGC-GAGACCUCGg---CGACG- -5'
10788 3' -61.1 NC_002794.1 + 19808 0.67 0.649412
Target:  5'- gCUcGGaCCGCGCgccggaCUGGAucaaGCUGCUGCa -3'
miRNA:   3'- aGAcCC-GGUGCGa-----GACCU----CGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 42615 0.67 0.659191
Target:  5'- --cGGGCUcucucgacgaccGCGCUCUcacagcGGAGUCGCgGCc -3'
miRNA:   3'- agaCCCGG------------UGCGAGA------CCUCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 90467 0.67 0.668952
Target:  5'- --cGaGGCCGCGCgCggcGGGGCCGCcGUc -3'
miRNA:   3'- agaC-CCGGUGCGaGa--CCUCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 193073 0.67 0.678684
Target:  5'- --cGGGCCGuCGCg--GGAcaGCCGCaGCa -3'
miRNA:   3'- agaCCCGGU-GCGagaCCU--CGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 78986 0.67 0.678684
Target:  5'- gCUGcGGCC--GCUCccGGAGUCGCgGCg -3'
miRNA:   3'- aGAC-CCGGugCGAGa-CCUCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 93478 0.67 0.678684
Target:  5'- --cGuGGCCACcuuCUCgcgGGAGUCGCUGg -3'
miRNA:   3'- agaC-CCGGUGc--GAGa--CCUCGGCGACg -5'
10788 3' -61.1 NC_002794.1 + 181546 0.67 0.682568
Target:  5'- --cGGGCCgGCGCUCUcGGucgccgGGCCaaucaggaucgacagGCUGCg -3'
miRNA:   3'- agaCCCGG-UGCGAGA-CC------UCGG---------------CGACG- -5'
10788 3' -61.1 NC_002794.1 + 110190 0.67 0.688382
Target:  5'- -aUGGGCCGCuGUUCgaacaaGGGGUCGCUc- -3'
miRNA:   3'- agACCCGGUG-CGAGa-----CCUCGGCGAcg -5'
10788 3' -61.1 NC_002794.1 + 105046 0.67 0.688382
Target:  5'- --aGGGUCACGUUCUcguucuggacGGGGUCGCcguccaggUGCg -3'
miRNA:   3'- agaCCCGGUGCGAGA----------CCUCGGCG--------ACG- -5'
10788 3' -61.1 NC_002794.1 + 106229 0.67 0.688382
Target:  5'- --cGcGGCCGCGCUCgGGucgcAGaCCGCcGCg -3'
miRNA:   3'- agaC-CCGGUGCGAGaCC----UC-GGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 62994 0.67 0.692249
Target:  5'- --cGGcGCCugGCacccccgcacguggCUGGAGCUGgUGCu -3'
miRNA:   3'- agaCC-CGGugCGa-------------GACCUCGGCgACG- -5'
10788 3' -61.1 NC_002794.1 + 59147 0.67 0.695145
Target:  5'- --aGGGCCgcgucgcgcacgacACGCUgCUGGcgcAGCUGCUGg -3'
miRNA:   3'- agaCCCGG--------------UGCGA-GACC---UCGGCGACg -5'
10788 3' -61.1 NC_002794.1 + 58441 0.67 0.698036
Target:  5'- --cGaGGCCACGCUgcgcCUGGccgcgcuGgCGCUGCa -3'
miRNA:   3'- agaC-CCGGUGCGA----GACCu------CgGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 111733 0.66 0.706683
Target:  5'- --cGGGCgaaCGCGCUCgucgagcUGGcGCCGCgcgGCg -3'
miRNA:   3'- agaCCCG---GUGCGAG-------ACCuCGGCGa--CG- -5'
10788 3' -61.1 NC_002794.1 + 147331 0.66 0.707641
Target:  5'- uUCgGGGCCGauCUCgugcGCCGCUGCc -3'
miRNA:   3'- -AGaCCCGGUgcGAGaccuCGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 22626 0.66 0.716235
Target:  5'- --cGGGCCgcucgagGCGCUC-GGA-CCGCUGa -3'
miRNA:   3'- agaCCCGG-------UGCGAGaCCUcGGCGACg -5'
10788 3' -61.1 NC_002794.1 + 48888 0.66 0.717186
Target:  5'- -gUGGcaggccagcguuGCCGCaGCUC-GGGGCCGCUccGCa -3'
miRNA:   3'- agACC------------CGGUG-CGAGaCCUCGGCGA--CG- -5'
10788 3' -61.1 NC_002794.1 + 34812 0.66 0.717186
Target:  5'- --cGGGCCGCGCgacaccacccccUCgccGGcGCCGgaGCg -3'
miRNA:   3'- agaCCCGGUGCG------------AGa--CCuCGGCgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.