miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 3' -61.1 NC_002794.1 + 105046 0.67 0.688382
Target:  5'- --aGGGUCACGUUCUcguucuggacGGGGUCGCcguccaggUGCg -3'
miRNA:   3'- agaCCCGGUGCGAGA----------CCUCGGCG--------ACG- -5'
10788 3' -61.1 NC_002794.1 + 181546 0.67 0.682568
Target:  5'- --cGGGCCgGCGCUCUcGGucgccgGGCCaaucaggaucgacagGCUGCg -3'
miRNA:   3'- agaCCCGG-UGCGAGA-CC------UCGG---------------CGACG- -5'
10788 3' -61.1 NC_002794.1 + 193073 0.67 0.678684
Target:  5'- --cGGGCCGuCGCg--GGAcaGCCGCaGCa -3'
miRNA:   3'- agaCCCGGU-GCGagaCCU--CGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 93478 0.67 0.678684
Target:  5'- --cGuGGCCACcuuCUCgcgGGAGUCGCUGg -3'
miRNA:   3'- agaC-CCGGUGc--GAGa--CCUCGGCGACg -5'
10788 3' -61.1 NC_002794.1 + 78986 0.67 0.678684
Target:  5'- gCUGcGGCC--GCUCccGGAGUCGCgGCg -3'
miRNA:   3'- aGAC-CCGGugCGAGa-CCUCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 90467 0.67 0.668952
Target:  5'- --cGaGGCCGCGCgCggcGGGGCCGCcGUc -3'
miRNA:   3'- agaC-CCGGUGCGaGa--CCUCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 42615 0.67 0.659191
Target:  5'- --cGGGCUcucucgacgaccGCGCUCUcacagcGGAGUCGCgGCc -3'
miRNA:   3'- agaCCCGG------------UGCGAGA------CCUCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 19808 0.67 0.649412
Target:  5'- gCUcGGaCCGCGCgccggaCUGGAucaaGCUGCUGCa -3'
miRNA:   3'- aGAcCC-GGUGCGa-----GACCU----CGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 120799 0.68 0.639619
Target:  5'- --aGGGUgACGuUUUUGGAGCggcaGCUGCg -3'
miRNA:   3'- agaCCCGgUGC-GAGACCUCGg---CGACG- -5'
10788 3' -61.1 NC_002794.1 + 145845 0.68 0.610237
Target:  5'- --cGGucGCCACGCUCgacGAGCCGCcgaggGCc -3'
miRNA:   3'- agaCC--CGGUGCGAGac-CUCGGCGa----CG- -5'
10788 3' -61.1 NC_002794.1 + 87377 0.68 0.610237
Target:  5'- uUCUGGGCgGCGCggccagaGcGAGCCGCa-- -3'
miRNA:   3'- -AGACCCGgUGCGaga----C-CUCGGCGacg -5'
10788 3' -61.1 NC_002794.1 + 149675 0.68 0.590713
Target:  5'- --gGGGCgcguCGCGCUCgacuggccgcgGGGGCCGCcugGCg -3'
miRNA:   3'- agaCCCG----GUGCGAGa----------CCUCGGCGa--CG- -5'
10788 3' -61.1 NC_002794.1 + 93700 0.69 0.571299
Target:  5'- cCU-GGCCACGCgcCUGGucgaccuGCUGUUGCg -3'
miRNA:   3'- aGAcCCGGUGCGa-GACCu------CGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 137584 0.69 0.571299
Target:  5'- --gGGGCCGgagUGCgg-GGAGCCGCcGCc -3'
miRNA:   3'- agaCCCGGU---GCGagaCCUCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 123953 0.69 0.561649
Target:  5'- gUCUGaGCCGCGCgCaGGAGCCGUa-- -3'
miRNA:   3'- -AGACcCGGUGCGaGaCCUCGGCGacg -5'
10788 3' -61.1 NC_002794.1 + 91248 0.69 0.532987
Target:  5'- --cGGGCUGCGCUCgcGGAcGCCGUUcGUg -3'
miRNA:   3'- agaCCCGGUGCGAGa-CCU-CGGCGA-CG- -5'
10788 3' -61.1 NC_002794.1 + 154186 0.7 0.514172
Target:  5'- aUCaGGGCCGcCGacgaUCUGGAGaCGCUGg -3'
miRNA:   3'- -AGaCCCGGU-GCg---AGACCUCgGCGACg -5'
10788 3' -61.1 NC_002794.1 + 94968 0.7 0.495633
Target:  5'- cCUGGaGCCgACGCgggggCUGGAgcucugucGCCGCUuGCu -3'
miRNA:   3'- aGACC-CGG-UGCGa----GACCU--------CGGCGA-CG- -5'
10788 3' -61.1 NC_002794.1 + 146489 0.7 0.495633
Target:  5'- gUCUGGaGCCcgucgaGCUCgcGGAGCCcCUGCu -3'
miRNA:   3'- -AGACC-CGGug----CGAGa-CCUCGGcGACG- -5'
10788 3' -61.1 NC_002794.1 + 152096 0.71 0.424837
Target:  5'- cCUGGGauaC-CGCcgUCUGGGGCUuGCUGCg -3'
miRNA:   3'- aGACCCg--GuGCG--AGACCUCGG-CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.