miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 3' -61.1 NC_002794.1 + 10645 0.66 0.723829
Target:  5'- --gGGaGCgGCGCgagcccgacgagcgUCUGGAGCCGCcugaGCu -3'
miRNA:   3'- agaCC-CGgUGCG--------------AGACCUCGGCGa---CG- -5'
10788 3' -61.1 NC_002794.1 + 12062 0.66 0.739808
Target:  5'- cUCUGGGCCGCGCcgccgaUgaacacgacgcugacCUGGAccgacgggacGCCGUgGCa -3'
miRNA:   3'- -AGACCCGGUGCG------A---------------GACCU----------CGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 12607 0.72 0.383771
Target:  5'- gCUGcGCCaccaGCGCgUCUGGGGCCGCUucgaGCa -3'
miRNA:   3'- aGACcCGG----UGCG-AGACCUCGGCGA----CG- -5'
10788 3' -61.1 NC_002794.1 + 19808 0.67 0.649412
Target:  5'- gCUcGGaCCGCGCgccggaCUGGAucaaGCUGCUGCa -3'
miRNA:   3'- aGAcCC-GGUGCGa-----GACCU----CGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 19970 0.65 0.761024
Target:  5'- gCUGcGGCCGCcCUucgggcuguccgucCUGGuGgCGCUGCg -3'
miRNA:   3'- aGAC-CCGGUGcGA--------------GACCuCgGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 22626 0.66 0.716235
Target:  5'- --cGGGCCgcucgagGCGCUC-GGA-CCGCUGa -3'
miRNA:   3'- agaCCCGG-------UGCGAGaCCUcGGCGACg -5'
10788 3' -61.1 NC_002794.1 + 34812 0.66 0.717186
Target:  5'- --cGGGCCGCGCgacaccacccccUCgccGGcGCCGgaGCg -3'
miRNA:   3'- agaCCCGGUGCG------------AGa--CCuCGGCgaCG- -5'
10788 3' -61.1 NC_002794.1 + 42615 0.67 0.659191
Target:  5'- --cGGGCUcucucgacgaccGCGCUCUcacagcGGAGUCGCgGCc -3'
miRNA:   3'- agaCCCGG------------UGCGAGA------CCUCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 48056 0.66 0.730436
Target:  5'- gCUGGGCacgGCGCUgaUGGccggccagcgggagcAGCCGCcGCu -3'
miRNA:   3'- aGACCCGg--UGCGAg-ACC---------------UCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 48888 0.66 0.717186
Target:  5'- -gUGGcaggccagcguuGCCGCaGCUC-GGGGCCGCUccGCa -3'
miRNA:   3'- agACC------------CGGUG-CGAGaCCUCGGCGA--CG- -5'
10788 3' -61.1 NC_002794.1 + 58441 0.67 0.698036
Target:  5'- --cGaGGCCACGCUgcgcCUGGccgcgcuGgCGCUGCa -3'
miRNA:   3'- agaC-CCGGUGCGA----GACCu------CgGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 58627 0.72 0.375879
Target:  5'- cCUGGugcgccugaucGCCACGCagCUGGgcgacgGGCUGCUGCa -3'
miRNA:   3'- aGACC-----------CGGUGCGa-GACC------UCGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 58753 0.73 0.323773
Target:  5'- --cGGGCagCugGCggaGGAGCCGCUGCu -3'
miRNA:   3'- agaCCCG--GugCGagaCCUCGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 59147 0.67 0.695145
Target:  5'- --aGGGCCgcgucgcgcacgacACGCUgCUGGcgcAGCUGCUGg -3'
miRNA:   3'- agaCCCGG--------------UGCGA-GACC---UCGGCGACg -5'
10788 3' -61.1 NC_002794.1 + 62994 0.67 0.692249
Target:  5'- --cGGcGCCugGCacccccgcacguggCUGGAGCUGgUGCu -3'
miRNA:   3'- agaCC-CGGugCGa-------------GACCUCGGCgACG- -5'
10788 3' -61.1 NC_002794.1 + 78986 0.67 0.678684
Target:  5'- gCUGcGGCC--GCUCccGGAGUCGCgGCg -3'
miRNA:   3'- aGAC-CCGGugCGAGa-CCUCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 81882 1.11 0.000926
Target:  5'- cUCUGGGCCACGCUCUGGAGCCGCUGCu -3'
miRNA:   3'- -AGACCCGGUGCGAGACCUCGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 83959 0.72 0.390967
Target:  5'- cCUGGGCCgccuggaGCGC-CUGGA-CCGCcGCg -3'
miRNA:   3'- aGACCCGG-------UGCGaGACCUcGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 85961 0.66 0.717186
Target:  5'- aCgGGGCCGCGgccCUCUcaucGGAccGCCGCgGCc -3'
miRNA:   3'- aGaCCCGGUGC---GAGA----CCU--CGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 87377 0.68 0.610237
Target:  5'- uUCUGGGCgGCGCggccagaGcGAGCCGCa-- -3'
miRNA:   3'- -AGACCCGgUGCGaga----C-CUCGGCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.