miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 3' -61.1 NC_002794.1 + 193073 0.67 0.678684
Target:  5'- --cGGGCCGuCGCg--GGAcaGCCGCaGCa -3'
miRNA:   3'- agaCCCGGU-GCGagaCCU--CGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 181546 0.67 0.682568
Target:  5'- --cGGGCCgGCGCUCUcGGucgccgGGCCaaucaggaucgacagGCUGCg -3'
miRNA:   3'- agaCCCGG-UGCGAGA-CC------UCGG---------------CGACG- -5'
10788 3' -61.1 NC_002794.1 + 155514 0.72 0.408094
Target:  5'- --cGGGCCGCcuguuccagucgGgUUUGGAGCUGUUGCa -3'
miRNA:   3'- agaCCCGGUG------------CgAGACCUCGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 154186 0.7 0.514172
Target:  5'- aUCaGGGCCGcCGacgaUCUGGAGaCGCUGg -3'
miRNA:   3'- -AGaCCCGGU-GCg---AGACCUCgGCGACg -5'
10788 3' -61.1 NC_002794.1 + 152096 0.71 0.424837
Target:  5'- cCUGGGauaC-CGCcgUCUGGGGCUuGCUGCg -3'
miRNA:   3'- aGACCCg--GuGCG--AGACCUCGG-CGACG- -5'
10788 3' -61.1 NC_002794.1 + 149675 0.68 0.590713
Target:  5'- --gGGGCgcguCGCGCUCgacuggccgcgGGGGCCGCcugGCg -3'
miRNA:   3'- agaCCCG----GUGCGAGa----------CCUCGGCGa--CG- -5'
10788 3' -61.1 NC_002794.1 + 147331 0.66 0.707641
Target:  5'- uUCgGGGCCGauCUCgugcGCCGCUGCc -3'
miRNA:   3'- -AGaCCCGGUgcGAGaccuCGGCGACG- -5'
10788 3' -61.1 NC_002794.1 + 146489 0.7 0.495633
Target:  5'- gUCUGGaGCCcgucgaGCUCgcGGAGCCcCUGCu -3'
miRNA:   3'- -AGACC-CGGug----CGAGa-CCUCGGcGACG- -5'
10788 3' -61.1 NC_002794.1 + 145845 0.68 0.610237
Target:  5'- --cGGucGCCACGCUCgacGAGCCGCcgaggGCc -3'
miRNA:   3'- agaCC--CGGUGCGAGac-CUCGGCGa----CG- -5'
10788 3' -61.1 NC_002794.1 + 144763 0.66 0.754621
Target:  5'- uUCUGGGa-ACGCagCUGGccggcgucGCCGCUGg -3'
miRNA:   3'- -AGACCCggUGCGa-GACCu-------CGGCGACg -5'
10788 3' -61.1 NC_002794.1 + 137781 0.66 0.754621
Target:  5'- --gGGGUCGaggugcagguCGCUgaGGAGCCGCaggaagGCg -3'
miRNA:   3'- agaCCCGGU----------GCGAgaCCUCGGCGa-----CG- -5'
10788 3' -61.1 NC_002794.1 + 137584 0.69 0.571299
Target:  5'- --gGGGCCGgagUGCgg-GGAGCCGCcGCc -3'
miRNA:   3'- agaCCCGGU---GCGagaCCUCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 123953 0.69 0.561649
Target:  5'- gUCUGaGCCGCGCgCaGGAGCCGUa-- -3'
miRNA:   3'- -AGACcCGGUGCGaGaCCUCGGCGacg -5'
10788 3' -61.1 NC_002794.1 + 123272 0.74 0.316784
Target:  5'- gUCcGGGCCGCGgUCgucgcgGGAGaCCuGCUGCu -3'
miRNA:   3'- -AGaCCCGGUGCgAGa-----CCUC-GG-CGACG- -5'
10788 3' -61.1 NC_002794.1 + 120799 0.68 0.639619
Target:  5'- --aGGGUgACGuUUUUGGAGCggcaGCUGCg -3'
miRNA:   3'- agaCCCGgUGC-GAGACCUCGg---CGACG- -5'
10788 3' -61.1 NC_002794.1 + 119389 0.71 0.424837
Target:  5'- gCUGGGCCA-GCacCUGGcGCCGCaGCc -3'
miRNA:   3'- aGACCCGGUgCGa-GACCuCGGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 111733 0.66 0.706683
Target:  5'- --cGGGCgaaCGCGCUCgucgagcUGGcGCCGCgcgGCg -3'
miRNA:   3'- agaCCCG---GUGCGAG-------ACCuCGGCGa--CG- -5'
10788 3' -61.1 NC_002794.1 + 110190 0.67 0.688382
Target:  5'- -aUGGGCCGCuGUUCgaacaaGGGGUCGCUc- -3'
miRNA:   3'- agACCCGGUG-CGAGa-----CCUCGGCGAcg -5'
10788 3' -61.1 NC_002794.1 + 106229 0.67 0.688382
Target:  5'- --cGcGGCCGCGCUCgGGucgcAGaCCGCcGCg -3'
miRNA:   3'- agaC-CCGGUGCGAGaCC----UC-GGCGaCG- -5'
10788 3' -61.1 NC_002794.1 + 105938 0.66 0.736069
Target:  5'- --cGGGCUggacGCGCUguacgaacggCUgGGGGCCGCcGCg -3'
miRNA:   3'- agaCCCGG----UGCGA----------GA-CCUCGGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.