miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 5' -52.3 NC_002794.1 + 93405 0.66 0.993155
Target:  5'- cCAAGU-UCGcCUCCGugGCCGAGuACGu -3'
miRNA:   3'- -GUUUAcGGC-GAGGUugCGGUUC-UGCc -5'
10788 5' -52.3 NC_002794.1 + 115343 0.66 0.993155
Target:  5'- ----gGCCGCUCgGcACGUCcAGGCGa -3'
miRNA:   3'- guuuaCGGCGAGgU-UGCGGuUCUGCc -5'
10788 5' -52.3 NC_002794.1 + 153583 0.66 0.993155
Target:  5'- aAGAUcGCCgGgUCCAacACGCCcuggaaGAGACGGc -3'
miRNA:   3'- gUUUA-CGG-CgAGGU--UGCGG------UUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 191645 0.66 0.993155
Target:  5'- ----cGCCG-UCCAGCaGCCcgccggGGGACGGc -3'
miRNA:   3'- guuuaCGGCgAGGUUG-CGG------UUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 91750 0.66 0.993155
Target:  5'- aAGGUGCCgGCgggcggCAcCGCgCAGGACGGg -3'
miRNA:   3'- gUUUACGG-CGag----GUuGCG-GUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 44413 0.66 0.993155
Target:  5'- ---cUGaCCGg-CCGGCGCCGAG-CGGc -3'
miRNA:   3'- guuuAC-GGCgaGGUUGCGGUUCuGCC- -5'
10788 5' -52.3 NC_002794.1 + 145590 0.66 0.993155
Target:  5'- gCGGcgGCCgGCUCC--CGCgGAGuCGGg -3'
miRNA:   3'- -GUUuaCGG-CGAGGuuGCGgUUCuGCC- -5'
10788 5' -52.3 NC_002794.1 + 59473 0.66 0.992864
Target:  5'- ----cGCCGCUaccucgaggaguucCCGcacuaccuGCGCCAcGACGGc -3'
miRNA:   3'- guuuaCGGCGA--------------GGU--------UGCGGUuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 185236 0.66 0.992251
Target:  5'- cCGAccGCCGCgcacgagagaaagcgCCAGCggacgccgccgGCCGAGugGGc -3'
miRNA:   3'- -GUUuaCGGCGa--------------GGUUG-----------CGGUUCugCC- -5'
10788 5' -52.3 NC_002794.1 + 122156 0.66 0.992145
Target:  5'- ----gGCCGUgUCCGACuaccugGCCGAGcACGGc -3'
miRNA:   3'- guuuaCGGCG-AGGUUG------CGGUUC-UGCC- -5'
10788 5' -52.3 NC_002794.1 + 43286 0.66 0.992145
Target:  5'- ---cUGCCGgcugucCUCCAGCaCCcGGGCGGu -3'
miRNA:   3'- guuuACGGC------GAGGUUGcGGuUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 53045 0.66 0.992145
Target:  5'- -uGGUGCCGCggcUCCAGCGU--AGGCa- -3'
miRNA:   3'- guUUACGGCG---AGGUUGCGguUCUGcc -5'
10788 5' -52.3 NC_002794.1 + 89939 0.66 0.992145
Target:  5'- ----cGCCgGCUucucgggagCCGACGUCGAGGCGu -3'
miRNA:   3'- guuuaCGG-CGA---------GGUUGCGGUUCUGCc -5'
10788 5' -52.3 NC_002794.1 + 103995 0.66 0.992145
Target:  5'- ----cGCCGCgaagCCGcCGCC--GGCGGa -3'
miRNA:   3'- guuuaCGGCGa---GGUuGCGGuuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 187072 0.66 0.992145
Target:  5'- cCAGGUGCCGCaggCUgcuCGCCAcGugGa -3'
miRNA:   3'- -GUUUACGGCGa--GGuu-GCGGUuCugCc -5'
10788 5' -52.3 NC_002794.1 + 154341 0.66 0.991485
Target:  5'- cCGGGUGCCGCggCCgAGCucccgcgcgguccagGCCGcGGCGGc -3'
miRNA:   3'- -GUUUACGGCGa-GG-UUG---------------CGGUuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 182627 0.66 0.991021
Target:  5'- cCAAccGCCG-UCCAGCGCCGucuccuGGGCu- -3'
miRNA:   3'- -GUUuaCGGCgAGGUUGCGGU------UCUGcc -5'
10788 5' -52.3 NC_002794.1 + 130339 0.66 0.991021
Target:  5'- aCGAagGCgGCgacgaCGACGCCGAcgacGACGGu -3'
miRNA:   3'- -GUUuaCGgCGag---GUUGCGGUU----CUGCC- -5'
10788 5' -52.3 NC_002794.1 + 57596 0.66 0.991021
Target:  5'- ----gGCCGCgCgCGugGCCAccgagaAGGCGGc -3'
miRNA:   3'- guuuaCGGCGaG-GUugCGGU------UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 34264 0.66 0.991021
Target:  5'- aGGcgGaCCGCgcgcaggcggCCAGCGCCAGcGACcGGg -3'
miRNA:   3'- gUUuaC-GGCGa---------GGUUGCGGUU-CUG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.