Results 1 - 20 of 254 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10788 | 5' | -52.3 | NC_002794.1 | + | 34264 | 0.66 | 0.991021 |
Target: 5'- aGGcgGaCCGCgcgcaggcggCCAGCGCCAGcGACcGGg -3' miRNA: 3'- gUUuaC-GGCGa---------GGUUGCGGUU-CUG-CC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 53045 | 0.66 | 0.992145 |
Target: 5'- -uGGUGCCGCggcUCCAGCGU--AGGCa- -3' miRNA: 3'- guUUACGGCG---AGGUUGCGguUCUGcc -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 43286 | 0.66 | 0.992145 |
Target: 5'- ---cUGCCGgcugucCUCCAGCaCCcGGGCGGu -3' miRNA: 3'- guuuACGGC------GAGGUUGcGGuUCUGCC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 122156 | 0.66 | 0.992145 |
Target: 5'- ----gGCCGUgUCCGACuaccugGCCGAGcACGGc -3' miRNA: 3'- guuuaCGGCG-AGGUUG------CGGUUC-UGCC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 154341 | 0.66 | 0.991485 |
Target: 5'- cCGGGUGCCGCggCCgAGCucccgcgcgguccagGCCGcGGCGGc -3' miRNA: 3'- -GUUUACGGCGa-GG-UUG---------------CGGUuCUGCC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 141128 | 0.66 | 0.991021 |
Target: 5'- ----cGCCacccgGCUCCGAguCGCCGAagccGGCGGa -3' miRNA: 3'- guuuaCGG-----CGAGGUU--GCGGUU----CUGCC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 182627 | 0.66 | 0.991021 |
Target: 5'- cCAAccGCCG-UCCAGCGCCGucuccuGGGCu- -3' miRNA: 3'- -GUUuaCGGCgAGGUUGCGGU------UCUGcc -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 130339 | 0.66 | 0.991021 |
Target: 5'- aCGAagGCgGCgacgaCGACGCCGAcgacGACGGu -3' miRNA: 3'- -GUUuaCGgCGag---GUUGCGGUU----CUGCC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 57596 | 0.66 | 0.991021 |
Target: 5'- ----gGCCGCgCgCGugGCCAccgagaAGGCGGc -3' miRNA: 3'- guuuaCGGCGaG-GUugCGGU------UCUGCC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 89939 | 0.66 | 0.992145 |
Target: 5'- ----cGCCgGCUucucgggagCCGACGUCGAGGCGu -3' miRNA: 3'- guuuaCGG-CGA---------GGUUGCGGUUCUGCc -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 103995 | 0.66 | 0.992145 |
Target: 5'- ----cGCCGCgaagCCGcCGCC--GGCGGa -3' miRNA: 3'- guuuaCGGCGa---GGUuGCGGuuCUGCC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 187072 | 0.66 | 0.992145 |
Target: 5'- cCAGGUGCCGCaggCUgcuCGCCAcGugGa -3' miRNA: 3'- -GUUUACGGCGa--GGuu-GCGGUuCugCc -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 145590 | 0.66 | 0.993155 |
Target: 5'- gCGGcgGCCgGCUCC--CGCgGAGuCGGg -3' miRNA: 3'- -GUUuaCGG-CGAGGuuGCGgUUCuGCC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 44413 | 0.66 | 0.993155 |
Target: 5'- ---cUGaCCGg-CCGGCGCCGAG-CGGc -3' miRNA: 3'- guuuAC-GGCgaGGUUGCGGUUCuGCC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 91750 | 0.66 | 0.993155 |
Target: 5'- aAGGUGCCgGCgggcggCAcCGCgCAGGACGGg -3' miRNA: 3'- gUUUACGG-CGag----GUuGCG-GUUCUGCC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 191645 | 0.66 | 0.993155 |
Target: 5'- ----cGCCG-UCCAGCaGCCcgccggGGGACGGc -3' miRNA: 3'- guuuaCGGCgAGGUUG-CGG------UUCUGCC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 153583 | 0.66 | 0.993155 |
Target: 5'- aAGAUcGCCgGgUCCAacACGCCcuggaaGAGACGGc -3' miRNA: 3'- gUUUA-CGG-CgAGGU--UGCGG------UUCUGCC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 115343 | 0.66 | 0.993155 |
Target: 5'- ----gGCCGCUCgGcACGUCcAGGCGa -3' miRNA: 3'- guuuaCGGCGAGgU-UGCGGuUCUGCc -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 59473 | 0.66 | 0.992864 |
Target: 5'- ----cGCCGCUaccucgaggaguucCCGcacuaccuGCGCCAcGACGGc -3' miRNA: 3'- guuuaCGGCGA--------------GGU--------UGCGGUuCUGCC- -5' |
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10788 | 5' | -52.3 | NC_002794.1 | + | 185236 | 0.66 | 0.992251 |
Target: 5'- cCGAccGCCGCgcacgagagaaagcgCCAGCggacgccgccgGCCGAGugGGc -3' miRNA: 3'- -GUUuaCGGCGa--------------GGUUG-----------CGGUUCugCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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