miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 5' -52.3 NC_002794.1 + 81916 1.1 0.00711
Target:  5'- cCAAAUGCCGCUCCAACGCCAAGACGGu -3'
miRNA:   3'- -GUUUACGGCGAGGUUGCGGUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 18736 0.82 0.353814
Target:  5'- ----aGCCGCcCCAACGCCAcGACGGc -3'
miRNA:   3'- guuuaCGGCGaGGUUGCGGUuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 191981 0.79 0.504761
Target:  5'- cCGAcgGCUcCUCCGACgGCCGGGACGGu -3'
miRNA:   3'- -GUUuaCGGcGAGGUUG-CGGUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 20620 0.79 0.504761
Target:  5'- gAGAUGCCcgGCUCCGGCuGCCucGACGGc -3'
miRNA:   3'- gUUUACGG--CGAGGUUG-CGGuuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 128286 0.78 0.544315
Target:  5'- cCGAcgGCCGuCUUCGACaCCGAGACGGc -3'
miRNA:   3'- -GUUuaCGGC-GAGGUUGcGGUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 180686 0.78 0.544315
Target:  5'- ----gGCCGCUcCCGGCGCCcggcGGGCGGa -3'
miRNA:   3'- guuuaCGGCGA-GGUUGCGGu---UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 62587 0.78 0.554368
Target:  5'- ----cGCCGCcgCCGACGCCAGGGCc- -3'
miRNA:   3'- guuuaCGGCGa-GGUUGCGGUUCUGcc -5'
10788 5' -52.3 NC_002794.1 + 70879 0.78 0.574629
Target:  5'- gCAGcgGCgGCUCCucgAGCGCCAGGuCGGu -3'
miRNA:   3'- -GUUuaCGgCGAGG---UUGCGGUUCuGCC- -5'
10788 5' -52.3 NC_002794.1 + 8051 0.78 0.584825
Target:  5'- ----cGCCGCaCCGucuuggcgggGCGCCAAGACGGu -3'
miRNA:   3'- guuuaCGGCGaGGU----------UGCGGUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 189026 0.77 0.625881
Target:  5'- cCAGGaGCCGCUCgAcCGCCAGcGGCGGg -3'
miRNA:   3'- -GUUUaCGGCGAGgUuGCGGUU-CUGCC- -5'
10788 5' -52.3 NC_002794.1 + 62294 0.77 0.636176
Target:  5'- ---cUGCCGCUCCGagcccGCGCgcAGACGGa -3'
miRNA:   3'- guuuACGGCGAGGU-----UGCGguUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 101261 0.76 0.66701
Target:  5'- gGGggGCCGCccCCGGCGCCGGuGGCGGc -3'
miRNA:   3'- gUUuaCGGCGa-GGUUGCGGUU-CUGCC- -5'
10788 5' -52.3 NC_002794.1 + 114862 0.76 0.677242
Target:  5'- ----cGCCGCUCCAGCGCCucGAg-- -3'
miRNA:   3'- guuuaCGGCGAGGUUGCGGuuCUgcc -5'
10788 5' -52.3 NC_002794.1 + 141514 0.75 0.707678
Target:  5'- ---cUGUCGCUaCGACGCCuGGGCGGg -3'
miRNA:   3'- guuuACGGCGAgGUUGCGGuUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 48916 0.75 0.717707
Target:  5'- ----gGCCGCUCCGcaGCGCCAgcgccAGGCGc -3'
miRNA:   3'- guuuaCGGCGAGGU--UGCGGU-----UCUGCc -5'
10788 5' -52.3 NC_002794.1 + 101550 0.75 0.72766
Target:  5'- cCGAAcGCCGUUCCgAACGCC--GGCGGg -3'
miRNA:   3'- -GUUUaCGGCGAGG-UUGCGGuuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 86367 0.75 0.737531
Target:  5'- cCGGAUGCCcCgggCCGA-GCCGGGACGGa -3'
miRNA:   3'- -GUUUACGGcGa--GGUUgCGGUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 86175 0.75 0.737531
Target:  5'- cCGGAUGCCcCgggCCGA-GCCGGGACGGa -3'
miRNA:   3'- -GUUUACGGcGa--GGUUgCGGUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 86535 0.75 0.737531
Target:  5'- cCGGAUGCCcCgggCCGA-GCCGGGACGGa -3'
miRNA:   3'- -GUUUACGGcGa--GGUUgCGGUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 150012 0.74 0.747309
Target:  5'- aCGAcgGcCCGCUCCGAgacccggcCGCCGAGugGa -3'
miRNA:   3'- -GUUuaC-GGCGAGGUU--------GCGGUUCugCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.