miRNA display CGI


Results 21 - 40 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 5' -52.3 NC_002794.1 + 150012 0.74 0.747309
Target:  5'- aCGAcgGcCCGCUCCGAgacccggcCGCCGAGugGa -3'
miRNA:   3'- -GUUuaC-GGCGAGGUU--------GCGGUUCugCc -5'
10788 5' -52.3 NC_002794.1 + 152125 0.74 0.747309
Target:  5'- ----cGCCGCUCCGcccUGCCGAGcCGGu -3'
miRNA:   3'- guuuaCGGCGAGGUu--GCGGUUCuGCC- -5'
10788 5' -52.3 NC_002794.1 + 152154 0.74 0.756984
Target:  5'- -----cCCGCUCCAGCGCCu--GCGGg -3'
miRNA:   3'- guuuacGGCGAGGUUGCGGuucUGCC- -5'
10788 5' -52.3 NC_002794.1 + 82569 0.74 0.756984
Target:  5'- ----aGCCgGCgaggCCGACGCCGccgAGACGGa -3'
miRNA:   3'- guuuaCGG-CGa---GGUUGCGGU---UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 10980 0.74 0.785304
Target:  5'- -cGAUGCCuGCUCCGAgGCCGcaAGugGa -3'
miRNA:   3'- guUUACGG-CGAGGUUgCGGU--UCugCc -5'
10788 5' -52.3 NC_002794.1 + 119604 0.74 0.785304
Target:  5'- ----aGUCGCUCCAGCGCCucGA-GGa -3'
miRNA:   3'- guuuaCGGCGAGGUUGCGGuuCUgCC- -5'
10788 5' -52.3 NC_002794.1 + 64818 0.73 0.794477
Target:  5'- gGAcgGCgGCgagCCGGCGCCGacgaccGGACGGc -3'
miRNA:   3'- gUUuaCGgCGa--GGUUGCGGU------UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 53761 0.73 0.794477
Target:  5'- ----cGCCGCUgCCGGCGgCGGGACGc -3'
miRNA:   3'- guuuaCGGCGA-GGUUGCgGUUCUGCc -5'
10788 5' -52.3 NC_002794.1 + 115609 0.73 0.794477
Target:  5'- ----cGCuCGC-CCGGCGCCGggAGGCGGg -3'
miRNA:   3'- guuuaCG-GCGaGGUUGCGGU--UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 143833 0.73 0.803502
Target:  5'- gAGcgGCCGgUCCGACGCCuccggccAGGCGa -3'
miRNA:   3'- gUUuaCGGCgAGGUUGCGGu------UCUGCc -5'
10788 5' -52.3 NC_002794.1 + 192635 0.73 0.81237
Target:  5'- gGGcgGCCGCUCCAgccGCGCCGccGCGc -3'
miRNA:   3'- gUUuaCGGCGAGGU---UGCGGUucUGCc -5'
10788 5' -52.3 NC_002794.1 + 111758 0.73 0.81237
Target:  5'- ----cGCCGCg-CGGCGCCGucgGGGCGGg -3'
miRNA:   3'- guuuaCGGCGagGUUGCGGU---UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 187265 0.73 0.82021
Target:  5'- ---cUGCCGCUCgCGcgucucgaacaccGCGCC-GGACGGg -3'
miRNA:   3'- guuuACGGCGAG-GU-------------UGCGGuUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 49267 0.73 0.821073
Target:  5'- aCGAcgGgCGCUCCAACGgCCcGGGCGc -3'
miRNA:   3'- -GUUuaCgGCGAGGUUGC-GGuUCUGCc -5'
10788 5' -52.3 NC_002794.1 + 112306 0.73 0.821073
Target:  5'- cCGGGU-CCGaCUUCGGCGCCGAcGGCGGg -3'
miRNA:   3'- -GUUUAcGGC-GAGGUUGCGGUU-CUGCC- -5'
10788 5' -52.3 NC_002794.1 + 82935 0.73 0.829602
Target:  5'- ----cGCCGCUCCGACuCCAGGcccgccgcgcACGGc -3'
miRNA:   3'- guuuaCGGCGAGGUUGcGGUUC----------UGCC- -5'
10788 5' -52.3 NC_002794.1 + 146992 0.73 0.837949
Target:  5'- ----cGCCGCcggCCGACGUCGGcGGCGGc -3'
miRNA:   3'- guuuaCGGCGa--GGUUGCGGUU-CUGCC- -5'
10788 5' -52.3 NC_002794.1 + 104777 0.73 0.837949
Target:  5'- ----cGgCGCUCCGacACGCCGacAGGCGGu -3'
miRNA:   3'- guuuaCgGCGAGGU--UGCGGU--UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 263 0.73 0.837949
Target:  5'- ----cGCCGCgcgcgCgGACGCgAGGACGGc -3'
miRNA:   3'- guuuaCGGCGa----GgUUGCGgUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 114753 0.72 0.846106
Target:  5'- ----cGCCGCccgCCGGCGCCGGuccucGGCGGc -3'
miRNA:   3'- guuuaCGGCGa--GGUUGCGGUU-----CUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.