miRNA display CGI


Results 21 - 40 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 5' -52.3 NC_002794.1 + 57596 0.66 0.991021
Target:  5'- ----gGCCGCgCgCGugGCCAccgagaAGGCGGc -3'
miRNA:   3'- guuuaCGGCGaG-GUugCGGU------UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 130339 0.66 0.991021
Target:  5'- aCGAagGCgGCgacgaCGACGCCGAcgacGACGGu -3'
miRNA:   3'- -GUUuaCGgCGag---GUUGCGGUU----CUGCC- -5'
10788 5' -52.3 NC_002794.1 + 182627 0.66 0.991021
Target:  5'- cCAAccGCCG-UCCAGCGCCGucuccuGGGCu- -3'
miRNA:   3'- -GUUuaCGGCgAGGUUGCGGU------UCUGcc -5'
10788 5' -52.3 NC_002794.1 + 141128 0.66 0.991021
Target:  5'- ----cGCCacccgGCUCCGAguCGCCGAagccGGCGGa -3'
miRNA:   3'- guuuaCGG-----CGAGGUU--GCGGUU----CUGCC- -5'
10788 5' -52.3 NC_002794.1 + 146176 0.66 0.989774
Target:  5'- uCAGGaG-CGCUUCGAgGCCGAGGCGcGg -3'
miRNA:   3'- -GUUUaCgGCGAGGUUgCGGUUCUGC-C- -5'
10788 5' -52.3 NC_002794.1 + 124721 0.66 0.989774
Target:  5'- ----cGCuCGUUCCAGC-CCAAGACc- -3'
miRNA:   3'- guuuaCG-GCGAGGUUGcGGUUCUGcc -5'
10788 5' -52.3 NC_002794.1 + 150537 0.66 0.989774
Target:  5'- ----aGCCGggCCGGCGCCAuGGCc- -3'
miRNA:   3'- guuuaCGGCgaGGUUGCGGUuCUGcc -5'
10788 5' -52.3 NC_002794.1 + 64278 0.66 0.989774
Target:  5'- gCAGGUGgCGCUCU-ACGCCcaccGCGGc -3'
miRNA:   3'- -GUUUACgGCGAGGuUGCGGuuc-UGCC- -5'
10788 5' -52.3 NC_002794.1 + 60772 0.66 0.989774
Target:  5'- ----cGCCGCcgCCGcCGUCGaacGGACGGc -3'
miRNA:   3'- guuuaCGGCGa-GGUuGCGGU---UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 19637 0.66 0.989774
Target:  5'- cCAGucgGCCGCUcuuuccCCGGCGCUggGucuucuCGGa -3'
miRNA:   3'- -GUUua-CGGCGA------GGUUGCGGuuCu-----GCC- -5'
10788 5' -52.3 NC_002794.1 + 188591 0.66 0.989774
Target:  5'- ----cGCCGCUCCAcggccgccuuGCGCCGcaGGuguGCGa -3'
miRNA:   3'- guuuaCGGCGAGGU----------UGCGGU--UC---UGCc -5'
10788 5' -52.3 NC_002794.1 + 190200 0.66 0.988395
Target:  5'- ----cG-CGCUCCAGCGCCGcgcgcacccgccGGGCGc -3'
miRNA:   3'- guuuaCgGCGAGGUUGCGGU------------UCUGCc -5'
10788 5' -52.3 NC_002794.1 + 110323 0.66 0.988395
Target:  5'- ----cGCCGC-CgCGACGCCGc-GCGGg -3'
miRNA:   3'- guuuaCGGCGaG-GUUGCGGUucUGCC- -5'
10788 5' -52.3 NC_002794.1 + 85535 0.66 0.988395
Target:  5'- ----cGCgGCUCCGcccaacaugGCcCCGGGACGGc -3'
miRNA:   3'- guuuaCGgCGAGGU---------UGcGGUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 137568 0.66 0.988395
Target:  5'- ----cGCCGCcgUCGcCGCCGGGGcCGGa -3'
miRNA:   3'- guuuaCGGCGa-GGUuGCGGUUCU-GCC- -5'
10788 5' -52.3 NC_002794.1 + 93141 0.66 0.988395
Target:  5'- ----cGCUGCccaagUCCGugGCCAucggcaAGAUGGa -3'
miRNA:   3'- guuuaCGGCG-----AGGUugCGGU------UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 194139 0.66 0.988395
Target:  5'- gCAGcgGCCGCagCAGCGCCc--GCGa -3'
miRNA:   3'- -GUUuaCGGCGagGUUGCGGuucUGCc -5'
10788 5' -52.3 NC_002794.1 + 151017 0.66 0.988395
Target:  5'- uCGAGUGCuCGC-CCGugGUCGcccgucugauGACGGg -3'
miRNA:   3'- -GUUUACG-GCGaGGUugCGGUu---------CUGCC- -5'
10788 5' -52.3 NC_002794.1 + 101494 0.66 0.98825
Target:  5'- cCGGcgGCCGgUCCGagcggugcggcacACGCC--GGCGGg -3'
miRNA:   3'- -GUUuaCGGCgAGGU-------------UGCGGuuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 40504 0.67 0.987501
Target:  5'- ----cGCCGCUCgAgucacggccgccgacGCGCC--GACGGg -3'
miRNA:   3'- guuuaCGGCGAGgU---------------UGCGGuuCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.