miRNA display CGI


Results 41 - 60 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 5' -52.3 NC_002794.1 + 48089 0.67 0.986877
Target:  5'- gCAGccGCCGCUcgCCGGCGUCAGGcuCGa -3'
miRNA:   3'- -GUUuaCGGCGA--GGUUGCGGUUCu-GCc -5'
10788 5' -52.3 NC_002794.1 + 50905 0.67 0.986877
Target:  5'- ----cGCCGaCUCCAGCuGCCgGAGcuCGGa -3'
miRNA:   3'- guuuaCGGC-GAGGUUG-CGG-UUCu-GCC- -5'
10788 5' -52.3 NC_002794.1 + 18863 0.67 0.986877
Target:  5'- ----cGCCGaucgCCAACGCCAccGACGc -3'
miRNA:   3'- guuuaCGGCga--GGUUGCGGUu-CUGCc -5'
10788 5' -52.3 NC_002794.1 + 17486 0.67 0.986877
Target:  5'- ----cGCCGCguuugcgaucgCCGACGCCGgccgAGAuCGGc -3'
miRNA:   3'- guuuaCGGCGa----------GGUUGCGGU----UCU-GCC- -5'
10788 5' -52.3 NC_002794.1 + 37419 0.67 0.986877
Target:  5'- ----aGCCGgUCCAGCGCCGuccGCa- -3'
miRNA:   3'- guuuaCGGCgAGGUUGCGGUuc-UGcc -5'
10788 5' -52.3 NC_002794.1 + 21453 0.67 0.986877
Target:  5'- ----cGUCGCUCgGcguCGCCGuGACGGc -3'
miRNA:   3'- guuuaCGGCGAGgUu--GCGGUuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 63479 0.67 0.986877
Target:  5'- gCGGcgGCCGCcgucgaCGACGCCGcGGCGu -3'
miRNA:   3'- -GUUuaCGGCGag----GUUGCGGUuCUGCc -5'
10788 5' -52.3 NC_002794.1 + 124985 0.67 0.986877
Target:  5'- ----cGCCGCacgUCC-GCGCCAAGcgacacccgaaGCGGu -3'
miRNA:   3'- guuuaCGGCG---AGGuUGCGGUUC-----------UGCC- -5'
10788 5' -52.3 NC_002794.1 + 108814 0.67 0.986877
Target:  5'- gAGGUGCaaCGCUUCGGCGUC--GGCGGc -3'
miRNA:   3'- gUUUACG--GCGAGGUUGCGGuuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 127795 0.67 0.986877
Target:  5'- ----gGCCgGCUCCGagucgACGCCGAG-CGa -3'
miRNA:   3'- guuuaCGG-CGAGGU-----UGCGGUUCuGCc -5'
10788 5' -52.3 NC_002794.1 + 134158 0.67 0.985209
Target:  5'- --cGUGuuGCUggCCGugGCCGcgcGGAUGGc -3'
miRNA:   3'- guuUACggCGA--GGUugCGGU---UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 55357 0.67 0.985209
Target:  5'- aGGcgGCCGaggcggCCGagGCgGCCGAGGCGGc -3'
miRNA:   3'- gUUuaCGGCga----GGU--UG-CGGUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 123846 0.67 0.985209
Target:  5'- cCGGAUGCCggGCgucagCCAcgugcuCGCCGAG-CGGg -3'
miRNA:   3'- -GUUUACGG--CGa----GGUu-----GCGGUUCuGCC- -5'
10788 5' -52.3 NC_002794.1 + 126604 0.67 0.985209
Target:  5'- ----cGCCGaggCCGGCGCCGAcgucGCGGc -3'
miRNA:   3'- guuuaCGGCga-GGUUGCGGUUc---UGCC- -5'
10788 5' -52.3 NC_002794.1 + 142545 0.67 0.985209
Target:  5'- gUAGAUGuuGC-CCuccGCGCCccGGAUGGg -3'
miRNA:   3'- -GUUUACggCGaGGu--UGCGGu-UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 46609 0.67 0.983385
Target:  5'- ----cGCCGCcgUCC-GCGCCGGGcUGGa -3'
miRNA:   3'- guuuaCGGCG--AGGuUGCGGUUCuGCC- -5'
10788 5' -52.3 NC_002794.1 + 114723 0.67 0.983385
Target:  5'- gCGGcgGCgGCUCCGgguuCGUCGAGcCGGn -3'
miRNA:   3'- -GUUuaCGgCGAGGUu---GCGGUUCuGCC- -5'
10788 5' -52.3 NC_002794.1 + 131184 0.67 0.983385
Target:  5'- ----aGCCGgagacagCaCGGCGCCGGGGCGGc -3'
miRNA:   3'- guuuaCGGCga-----G-GUUGCGGUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 194050 0.67 0.983385
Target:  5'- ----cGCCGCcgCCGcCGCCGAGAgCGc -3'
miRNA:   3'- guuuaCGGCGa-GGUuGCGGUUCU-GCc -5'
10788 5' -52.3 NC_002794.1 + 63397 0.67 0.983385
Target:  5'- ----cGCUGCUCCccguuucccGACGgCcGGACGGa -3'
miRNA:   3'- guuuaCGGCGAGG---------UUGCgGuUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.