miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 5' -52.3 NC_002794.1 + 263 0.73 0.837949
Target:  5'- ----cGCCGCgcgcgCgGACGCgAGGACGGc -3'
miRNA:   3'- guuuaCGGCGa----GgUUGCGgUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 910 0.67 0.979234
Target:  5'- ----cGCCGCUCCccGCGCCuucuuuuGGuuuCGGa -3'
miRNA:   3'- guuuaCGGCGAGGu-UGCGGu------UCu--GCC- -5'
10788 5' -52.3 NC_002794.1 + 8051 0.78 0.584825
Target:  5'- ----cGCCGCaCCGucuuggcgggGCGCCAAGACGGu -3'
miRNA:   3'- guuuaCGGCGaGGU----------UGCGGUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 8098 0.68 0.971629
Target:  5'- ----gGCCcauCUCUAGCGCCAccgagcGGGCGGc -3'
miRNA:   3'- guuuaCGGc--GAGGUUGCGGU------UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 8758 0.69 0.962202
Target:  5'- --cGUGUCGCgaCGGCGUgAAGACGGc -3'
miRNA:   3'- guuUACGGCGagGUUGCGgUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 10007 0.69 0.950793
Target:  5'- gAGAUGCCGC-CCAGCacCCAggcuAGAgGGg -3'
miRNA:   3'- gUUUACGGCGaGGUUGc-GGU----UCUgCC- -5'
10788 5' -52.3 NC_002794.1 + 10980 0.74 0.785304
Target:  5'- -cGAUGCCuGCUCCGAgGCCGcaAGugGa -3'
miRNA:   3'- guUUACGG-CGAGGUUgCGGU--UCugCc -5'
10788 5' -52.3 NC_002794.1 + 11843 0.67 0.981396
Target:  5'- ----cGCCGCgaccUCCGAcCGCCGGcGACGa -3'
miRNA:   3'- guuuaCGGCG----AGGUU-GCGGUU-CUGCc -5'
10788 5' -52.3 NC_002794.1 + 12169 0.71 0.909966
Target:  5'- cCGGAUcGUCGCcgCCGACGCCGccGCGGc -3'
miRNA:   3'- -GUUUA-CGGCGa-GGUUGCGGUucUGCC- -5'
10788 5' -52.3 NC_002794.1 + 12203 0.68 0.971629
Target:  5'- ----cGCCGCUCgGACGUgccGGCGGc -3'
miRNA:   3'- guuuaCGGCGAGgUUGCGguuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 13069 0.68 0.971629
Target:  5'- uGAGgggGCCGCgcgaCCGGCGCgAAGuccCGGg -3'
miRNA:   3'- gUUUa--CGGCGa---GGUUGCGgUUCu--GCC- -5'
10788 5' -52.3 NC_002794.1 + 13250 0.69 0.942027
Target:  5'- ---uUGCUGCUCCu-CGCCGGGcugugguggaGCGGc -3'
miRNA:   3'- guuuACGGCGAGGuuGCGGUUC----------UGCC- -5'
10788 5' -52.3 NC_002794.1 + 14213 0.71 0.890702
Target:  5'- ----gGCCGCcCCAACGCCAcccgccGACGa -3'
miRNA:   3'- guuuaCGGCGaGGUUGCGGUu-----CUGCc -5'
10788 5' -52.3 NC_002794.1 + 16777 0.68 0.968698
Target:  5'- gAAcgGCaCGCgCCGACGCCAAaucgccGACGa -3'
miRNA:   3'- gUUuaCG-GCGaGGUUGCGGUU------CUGCc -5'
10788 5' -52.3 NC_002794.1 + 17486 0.67 0.986877
Target:  5'- ----cGCCGCguuugcgaucgCCGACGCCGgccgAGAuCGGc -3'
miRNA:   3'- guuuaCGGCGa----------GGUUGCGGU----UCU-GCC- -5'
10788 5' -52.3 NC_002794.1 + 18736 0.82 0.353814
Target:  5'- ----aGCCGCcCCAACGCCAcGACGGc -3'
miRNA:   3'- guuuaCGGCGaGGUUGCGGUuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 18863 0.67 0.986877
Target:  5'- ----cGCCGaucgCCAACGCCAccGACGc -3'
miRNA:   3'- guuuaCGGCga--GGUUGCGGUu-CUGCc -5'
10788 5' -52.3 NC_002794.1 + 19517 0.71 0.883817
Target:  5'- ----cGCCGCUCgGAgCGCCGGcGCGGc -3'
miRNA:   3'- guuuaCGGCGAGgUU-GCGGUUcUGCC- -5'
10788 5' -52.3 NC_002794.1 + 19637 0.66 0.989774
Target:  5'- cCAGucgGCCGCUcuuuccCCGGCGCUggGucuucuCGGa -3'
miRNA:   3'- -GUUua-CGGCGA------GGUUGCGGuuCu-----GCC- -5'
10788 5' -52.3 NC_002794.1 + 19799 0.67 0.979234
Target:  5'- ----cGCUGCUCCGcucggaccgcGCGCC-GGACuGGa -3'
miRNA:   3'- guuuaCGGCGAGGU----------UGCGGuUCUG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.