miRNA display CGI


Results 21 - 40 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 5' -52.3 NC_002794.1 + 20620 0.79 0.504761
Target:  5'- gAGAUGCCcgGCUCCGGCuGCCucGACGGc -3'
miRNA:   3'- gUUUACGG--CGAGGUUG-CGGuuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 21453 0.67 0.986877
Target:  5'- ----cGUCGCUCgGcguCGCCGuGACGGc -3'
miRNA:   3'- guuuaCGGCGAGgUu--GCGGUuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 23457 0.68 0.971629
Target:  5'- ----cGuCCGgaUCGACGUCGGGGCGGa -3'
miRNA:   3'- guuuaC-GGCgaGGUUGCGGUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 32586 0.69 0.942027
Target:  5'- -cGGUGCCGgggCCGGgGCCGGGGcCGGg -3'
miRNA:   3'- guUUACGGCga-GGUUgCGGUUCU-GCC- -5'
10788 5' -52.3 NC_002794.1 + 33033 0.67 0.981396
Target:  5'- ----cGcCCGCggagCCGACGCCAucGACGu -3'
miRNA:   3'- guuuaC-GGCGa---GGUUGCGGUu-CUGCc -5'
10788 5' -52.3 NC_002794.1 + 34264 0.66 0.991021
Target:  5'- aGGcgGaCCGCgcgcaggcggCCAGCGCCAGcGACcGGg -3'
miRNA:   3'- gUUuaC-GGCGa---------GGUUGCGGUU-CUG-CC- -5'
10788 5' -52.3 NC_002794.1 + 36544 0.67 0.980766
Target:  5'- -cAGUGCCGCgacuccUCCGuccgcugcagacacGCGCCGccgagcAGGCGGu -3'
miRNA:   3'- guUUACGGCG------AGGU--------------UGCGGU------UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 37419 0.67 0.986877
Target:  5'- ----aGCCGgUCCAGCGCCGuccGCa- -3'
miRNA:   3'- guuuaCGGCgAGGUUGCGGUuc-UGcc -5'
10788 5' -52.3 NC_002794.1 + 37810 0.67 0.979234
Target:  5'- aGAcgGUCGCUCC--CGCCGucacggcGACGGc -3'
miRNA:   3'- gUUuaCGGCGAGGuuGCGGUu------CUGCC- -5'
10788 5' -52.3 NC_002794.1 + 38425 0.67 0.979234
Target:  5'- ----cGCCGaCUCCAugGCggCGGGcCGGa -3'
miRNA:   3'- guuuaCGGC-GAGGUugCG--GUUCuGCC- -5'
10788 5' -52.3 NC_002794.1 + 38560 0.7 0.915913
Target:  5'- cCAGAaGCC-CgCCGGCGCCucGACGGa -3'
miRNA:   3'- -GUUUaCGGcGaGGUUGCGGuuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 40281 0.69 0.942027
Target:  5'- uCGGGUcGCCGCuacgcgUCCGucGCGCCGaggagGGACGGu -3'
miRNA:   3'- -GUUUA-CGGCG------AGGU--UGCGGU-----UCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 40504 0.67 0.987501
Target:  5'- ----cGCCGCUCgAgucacggccgccgacGCGCC--GACGGg -3'
miRNA:   3'- guuuaCGGCGAGgU---------------UGCGGuuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 41243 0.72 0.846106
Target:  5'- ----cGCCGCggccgCCGACGCC--GGCGGc -3'
miRNA:   3'- guuuaCGGCGa----GGUUGCGGuuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 41287 0.72 0.846106
Target:  5'- aCGGcgGCgGCUCCGACGCgGGccgcGugGGg -3'
miRNA:   3'- -GUUuaCGgCGAGGUUGCGgUU----CugCC- -5'
10788 5' -52.3 NC_002794.1 + 42220 0.67 0.981396
Target:  5'- ---cUGCCGCUggaUCAGC-CgCGAGACGGc -3'
miRNA:   3'- guuuACGGCGA---GGUUGcG-GUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 42475 0.69 0.946528
Target:  5'- --cAUGUCGCgcgcgCCGGgGCCGAG-CGGa -3'
miRNA:   3'- guuUACGGCGa----GGUUgCGGUUCuGCC- -5'
10788 5' -52.3 NC_002794.1 + 43286 0.66 0.992145
Target:  5'- ---cUGCCGgcugucCUCCAGCaCCcGGGCGGu -3'
miRNA:   3'- guuuACGGC------GAGGUUGcGGuUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 43806 0.68 0.974358
Target:  5'- ----cGCCGCUCCGG-GCCcAGGCu- -3'
miRNA:   3'- guuuaCGGCGAGGUUgCGGuUCUGcc -5'
10788 5' -52.3 NC_002794.1 + 44253 0.68 0.97689
Target:  5'- -cGGUGCCgggcgGCUCgGcCGCCgGGGACGGa -3'
miRNA:   3'- guUUACGG-----CGAGgUuGCGG-UUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.