miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10788 5' -52.3 NC_002794.1 + 194924 0.68 0.971629
Target:  5'- gCAGcgGCCGCaCCAGCuCCGAcGGCGa -3'
miRNA:   3'- -GUUuaCGGCGaGGUUGcGGUU-CUGCc -5'
10788 5' -52.3 NC_002794.1 + 194139 0.66 0.988395
Target:  5'- gCAGcgGCCGCagCAGCGCCc--GCGa -3'
miRNA:   3'- -GUUuaCGGCGagGUUGCGGuucUGCc -5'
10788 5' -52.3 NC_002794.1 + 194050 0.67 0.983385
Target:  5'- ----cGCCGCcgCCGcCGCCGAGAgCGc -3'
miRNA:   3'- guuuaCGGCGa-GGUuGCGGUUCU-GCc -5'
10788 5' -52.3 NC_002794.1 + 192635 0.73 0.81237
Target:  5'- gGGcgGCCGCUCCAgccGCGCCGccGCGc -3'
miRNA:   3'- gUUuaCGGCGAGGU---UGCGGUucUGCc -5'
10788 5' -52.3 NC_002794.1 + 192399 0.7 0.921619
Target:  5'- ----cGCCGCgCCGggguagucgaaACGCCGcGACGGg -3'
miRNA:   3'- guuuaCGGCGaGGU-----------UGCGGUuCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 192141 0.69 0.946528
Target:  5'- ---uUGCUGCUgCCGGCGCgGucgcGGCGGa -3'
miRNA:   3'- guuuACGGCGA-GGUUGCGgUu---CUGCC- -5'
10788 5' -52.3 NC_002794.1 + 191981 0.79 0.504761
Target:  5'- cCGAcgGCUcCUCCGACgGCCGGGACGGu -3'
miRNA:   3'- -GUUuaCGGcGAGGUUG-CGGUUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 191645 0.66 0.993155
Target:  5'- ----cGCCG-UCCAGCaGCCcgccggGGGACGGc -3'
miRNA:   3'- guuuaCGGCgAGGUUG-CGG------UUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 190200 0.66 0.988395
Target:  5'- ----cG-CGCUCCAGCGCCGcgcgcacccgccGGGCGc -3'
miRNA:   3'- guuuaCgGCGAGGUUGCGGU------------UCUGCc -5'
10788 5' -52.3 NC_002794.1 + 189935 0.69 0.962202
Target:  5'- cCGAcgGCCGC-CgAugGaCCcGGACGGa -3'
miRNA:   3'- -GUUuaCGGCGaGgUugC-GGuUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 189530 0.71 0.890702
Target:  5'- gCGGGUGCCGCUCCca-GUCGAuccaccacauGGCGGu -3'
miRNA:   3'- -GUUUACGGCGAGGuugCGGUU----------CUGCC- -5'
10788 5' -52.3 NC_002794.1 + 189131 0.67 0.981396
Target:  5'- cCAAGUGCgggGCcgCCAGCGCCA-GACu- -3'
miRNA:   3'- -GUUUACGg--CGa-GGUUGCGGUuCUGcc -5'
10788 5' -52.3 NC_002794.1 + 189026 0.77 0.625881
Target:  5'- cCAGGaGCCGCUCgAcCGCCAGcGGCGGg -3'
miRNA:   3'- -GUUUaCGGCGAGgUuGCGGUU-CUGCC- -5'
10788 5' -52.3 NC_002794.1 + 188591 0.66 0.989774
Target:  5'- ----cGCCGCUCCAcggccgccuuGCGCCGcaGGuguGCGa -3'
miRNA:   3'- guuuaCGGCGAGGU----------UGCGGU--UC---UGCc -5'
10788 5' -52.3 NC_002794.1 + 187265 0.73 0.82021
Target:  5'- ---cUGCCGCUCgCGcgucucgaacaccGCGCC-GGACGGg -3'
miRNA:   3'- guuuACGGCGAG-GU-------------UGCGGuUCUGCC- -5'
10788 5' -52.3 NC_002794.1 + 187072 0.66 0.992145
Target:  5'- cCAGGUGCCGCaggCUgcuCGCCAcGugGa -3'
miRNA:   3'- -GUUUACGGCGa--GGuu-GCGGUuCugCc -5'
10788 5' -52.3 NC_002794.1 + 186736 0.66 0.991021
Target:  5'- ----aGCUGC-CCAccGCGCCGAGcACGu -3'
miRNA:   3'- guuuaCGGCGaGGU--UGCGGUUC-UGCc -5'
10788 5' -52.3 NC_002794.1 + 186012 0.68 0.971629
Target:  5'- ----cGCCGCUCCGG-GCCcGGGCccGGa -3'
miRNA:   3'- guuuaCGGCGAGGUUgCGGuUCUG--CC- -5'
10788 5' -52.3 NC_002794.1 + 185236 0.66 0.992251
Target:  5'- cCGAccGCCGCgcacgagagaaagcgCCAGCggacgccgccgGCCGAGugGGc -3'
miRNA:   3'- -GUUuaCGGCGa--------------GGUUG-----------CGGUUCugCC- -5'
10788 5' -52.3 NC_002794.1 + 184479 0.67 0.983385
Target:  5'- gAAcgGCgCGCggggCCccgGACGCCcGGGCGGc -3'
miRNA:   3'- gUUuaCG-GCGa---GG---UUGCGGuUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.