miRNA display CGI


Results 1 - 20 of 243 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 3' -53.3 NC_002794.1 + 139480 0.66 0.99285
Target:  5'- aCGGugGuguAGAuGGGcGCGGGCgCGCu -3'
miRNA:   3'- gGCCugCu--UCUuCUUcUGCCUGgGCG- -5'
10789 3' -53.3 NC_002794.1 + 102749 0.66 0.99285
Target:  5'- gCUGGcCGAGGAcccGGAcuACGuGGCCgCGCa -3'
miRNA:   3'- -GGCCuGCUUCU---UCUucUGC-CUGG-GCG- -5'
10789 3' -53.3 NC_002794.1 + 130945 0.66 0.99285
Target:  5'- gCUGGAacCGAucccAGGAGGGuCGGAUCUGCu -3'
miRNA:   3'- -GGCCU--GCUuc--UUCUUCU-GCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 65183 0.66 0.99285
Target:  5'- aCCGG-CGGGugccGgcGAGGuCGGACCCu- -3'
miRNA:   3'- -GGCCuGCUU----CuuCUUCuGCCUGGGcg -5'
10789 3' -53.3 NC_002794.1 + 68810 0.66 0.99285
Target:  5'- -aGGACGAcucGAGAcAGACGGcgACgCCGCc -3'
miRNA:   3'- ggCCUGCUuc-UUCU-UCUGCC--UG-GGCG- -5'
10789 3' -53.3 NC_002794.1 + 138774 0.66 0.99285
Target:  5'- gCGGuCGguGGAGggGAgGGGUCaCGCa -3'
miRNA:   3'- gGCCuGCuuCUUCuuCUgCCUGG-GCG- -5'
10789 3' -53.3 NC_002794.1 + 117310 0.66 0.99285
Target:  5'- gUCGaGCGAcuGGAAGguGGCgaGGAUCCGCc -3'
miRNA:   3'- -GGCcUGCU--UCUUCuuCUG--CCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 107602 0.66 0.99285
Target:  5'- gCGGGgGAGacGggGAAGACGGGgaCGg -3'
miRNA:   3'- gGCCUgCUU--CuuCUUCUGCCUggGCg -5'
10789 3' -53.3 NC_002794.1 + 113118 0.66 0.992753
Target:  5'- aCCuGGCGcuucuccguguccGAGAGGAAgGGCGGGCgCGUc -3'
miRNA:   3'- -GGcCUGC-------------UUCUUCUU-CUGCCUGgGCG- -5'
10789 3' -53.3 NC_002794.1 + 136517 0.66 0.992753
Target:  5'- gCgGGGCGAGGuAG-AGAUGGuugaagaGCCCGa -3'
miRNA:   3'- -GgCCUGCUUCuUCuUCUGCC-------UGGGCg -5'
10789 3' -53.3 NC_002794.1 + 105775 0.66 0.992253
Target:  5'- gUCGGugGGccgcgucgauaggucGGucucGGAGACGGACCgaaaGCg -3'
miRNA:   3'- -GGCCugCU---------------UCuu--CUUCUGCCUGGg---CG- -5'
10789 3' -53.3 NC_002794.1 + 1920 0.66 0.992253
Target:  5'- -gGGGCGuguuccucgccaaaaAAGAAGAAGuccgaGGcGCCCGCc -3'
miRNA:   3'- ggCCUGC---------------UUCUUCUUCug---CC-UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 33706 0.66 0.991834
Target:  5'- gCGGGCGAGccgcuggucuacGAc-GAGACGGugCUGUa -3'
miRNA:   3'- gGCCUGCUU------------CUucUUCUGCCugGGCG- -5'
10789 3' -53.3 NC_002794.1 + 53406 0.66 0.991834
Target:  5'- -gGGcACGucGAAGAAcaGCGG-CCCGCu -3'
miRNA:   3'- ggCC-UGCuuCUUCUUc-UGCCuGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 136125 0.66 0.991834
Target:  5'- gCGGGCGAAGucGAAGAggaGGGCgaGg -3'
miRNA:   3'- gGCCUGCUUCuuCUUCUg--CCUGggCg -5'
10789 3' -53.3 NC_002794.1 + 130456 0.66 0.991834
Target:  5'- uUGGGCGgcGAGGcgcuGGCGG-CuuGCg -3'
miRNA:   3'- gGCCUGCuuCUUCuu--CUGCCuGggCG- -5'
10789 3' -53.3 NC_002794.1 + 155554 0.66 0.991834
Target:  5'- aCGGACGccGcAGGAGAaccUGGAguuUCCGCu -3'
miRNA:   3'- gGCCUGCuuCuUCUUCU---GCCU---GGGCG- -5'
10789 3' -53.3 NC_002794.1 + 149500 0.66 0.991834
Target:  5'- -gGGAUGggGAuGguGACGGGgUCGUc -3'
miRNA:   3'- ggCCUGCuuCUuCuuCUGCCUgGGCG- -5'
10789 3' -53.3 NC_002794.1 + 55495 0.66 0.991834
Target:  5'- cCCGGAacAGGAu---GACGGuCCUGCg -3'
miRNA:   3'- -GGCCUgcUUCUucuuCUGCCuGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 126719 0.66 0.991834
Target:  5'- -gGGGCGAGGggGGugGGugGGGaCgGUg -3'
miRNA:   3'- ggCCUGCUUCuuCU--UCugCCUgGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.