Results 1 - 20 of 243 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 81579 | 1.15 | 0.003925 |
Target: 5'- gCCGGACGAAGAAGAAGACGGACCCGCg -3' miRNA: 3'- -GGCCUGCUUCUUCUUCUGCCUGGGCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 144298 | 0.88 | 0.175745 |
Target: 5'- cCCGGugGAcGAGGAGGACGGGCCgaGCu -3' miRNA: 3'- -GGCCugCUuCUUCUUCUGCCUGGg-CG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 149837 | 0.86 | 0.237327 |
Target: 5'- aCGGGCGggGAcGAGGACGGggacgaggagcggccGCCCGCu -3' miRNA: 3'- gGCCUGCuuCUuCUUCUGCC---------------UGGGCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 179629 | 0.81 | 0.411078 |
Target: 5'- gCCGGGCGcugcgacggaAAGGAGAagucAGGCGGGCUCGCc -3' miRNA: 3'- -GGCCUGC----------UUCUUCU----UCUGCCUGGGCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 32602 | 0.8 | 0.445897 |
Target: 5'- gCCGGGgcCGggGccGggGAuCGGGCCCGCc -3' miRNA: 3'- -GGCCU--GCuuCuuCuuCU-GCCUGGGCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 72420 | 0.8 | 0.470307 |
Target: 5'- gCCGcGGCGGAGGAGGAGccgGCGGAgggaccggcggcgcCCCGCg -3' miRNA: 3'- -GGC-CUGCUUCUUCUUC---UGCCU--------------GGGCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 44329 | 0.8 | 0.473061 |
Target: 5'- gCGcGGCGgcGAAGAAGACGGcGCCgGCg -3' miRNA: 3'- gGC-CUGCuuCUUCUUCUGCC-UGGgCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 38601 | 0.78 | 0.54916 |
Target: 5'- cCCGGACG-AGAGGccGGACGGGCgCGUc -3' miRNA: 3'- -GGCCUGCuUCUUCu-UCUGCCUGgGCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 51267 | 0.78 | 0.54916 |
Target: 5'- gCGGGCcGGGAGGcAGGCGcGGCCCGCc -3' miRNA: 3'- gGCCUGcUUCUUCuUCUGC-CUGGGCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 14615 | 0.78 | 0.529711 |
Target: 5'- aCCGcGACGggGccGGAGACGGGgCCGg -3' miRNA: 3'- -GGC-CUGCuuCuuCUUCUGCCUgGGCg -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 143419 | 0.77 | 0.588661 |
Target: 5'- gCCGGGCGAAGGuccGGAAggccagcauGACGGucacgaGCCCGCc -3' miRNA: 3'- -GGCCUGCUUCU---UCUU---------CUGCC------UGGGCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 138973 | 0.77 | 0.628641 |
Target: 5'- gCGGACGGGuuGGccuGGCGGGCCUGCg -3' miRNA: 3'- gGCCUGCUUcuUCuu-CUGCCUGGGCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 189953 | 0.76 | 0.658676 |
Target: 5'- cCCGGACGGAcc-GAcGGACGGgccGCCCGCu -3' miRNA: 3'- -GGCCUGCUUcuuCU-UCUGCC---UGGGCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 133635 | 0.75 | 0.688527 |
Target: 5'- gUCGGugGgAAGAAGGucgGGGuCGGACCCGa -3' miRNA: 3'- -GGCCugC-UUCUUCU---UCU-GCCUGGGCg -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 145616 | 0.75 | 0.727659 |
Target: 5'- gCGcGACGAGGAGcucggcccGGAGAuCGGACCCGa -3' miRNA: 3'- gGC-CUGCUUCUU--------CUUCU-GCCUGGGCg -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 104711 | 0.75 | 0.727659 |
Target: 5'- aCCGG-CGugcacGAGAGGuAGAUGGGCCCGg -3' miRNA: 3'- -GGCCuGC-----UUCUUCuUCUGCCUGGGCg -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 125720 | 0.75 | 0.698399 |
Target: 5'- gCGGAgCGAacGGGAGGAGGCGGAggcgggCCGCg -3' miRNA: 3'- gGCCU-GCU--UCUUCUUCUGCCUg-----GGCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 183592 | 0.75 | 0.698399 |
Target: 5'- aCGGugGggGcGGAGGG-GGGCCgCGCg -3' miRNA: 3'- gGCCugCuuCuUCUUCUgCCUGG-GCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 143643 | 0.75 | 0.717973 |
Target: 5'- aUGG-CGggGAAGAgcguGGACGGcaGCCCGUu -3' miRNA: 3'- gGCCuGCuuCUUCU----UCUGCC--UGGGCG- -5' |
|||||||
10789 | 3' | -53.3 | NC_002794.1 | + | 145725 | 0.75 | 0.737267 |
Target: 5'- aUCGGGCGcuGGAGgcGGCGGcGCCgGCa -3' miRNA: 3'- -GGCCUGCuuCUUCuuCUGCC-UGGgCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home