miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 3' -53.3 NC_002794.1 + 81579 1.15 0.003925
Target:  5'- gCCGGACGAAGAAGAAGACGGACCCGCg -3'
miRNA:   3'- -GGCCUGCUUCUUCUUCUGCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 144298 0.88 0.175745
Target:  5'- cCCGGugGAcGAGGAGGACGGGCCgaGCu -3'
miRNA:   3'- -GGCCugCUuCUUCUUCUGCCUGGg-CG- -5'
10789 3' -53.3 NC_002794.1 + 149837 0.86 0.237327
Target:  5'- aCGGGCGggGAcGAGGACGGggacgaggagcggccGCCCGCu -3'
miRNA:   3'- gGCCUGCuuCUuCUUCUGCC---------------UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 179629 0.81 0.411078
Target:  5'- gCCGGGCGcugcgacggaAAGGAGAagucAGGCGGGCUCGCc -3'
miRNA:   3'- -GGCCUGC----------UUCUUCU----UCUGCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 32602 0.8 0.445897
Target:  5'- gCCGGGgcCGggGccGggGAuCGGGCCCGCc -3'
miRNA:   3'- -GGCCU--GCuuCuuCuuCU-GCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 72420 0.8 0.470307
Target:  5'- gCCGcGGCGGAGGAGGAGccgGCGGAgggaccggcggcgcCCCGCg -3'
miRNA:   3'- -GGC-CUGCUUCUUCUUC---UGCCU--------------GGGCG- -5'
10789 3' -53.3 NC_002794.1 + 44329 0.8 0.473061
Target:  5'- gCGcGGCGgcGAAGAAGACGGcGCCgGCg -3'
miRNA:   3'- gGC-CUGCuuCUUCUUCUGCC-UGGgCG- -5'
10789 3' -53.3 NC_002794.1 + 14615 0.78 0.529711
Target:  5'- aCCGcGACGggGccGGAGACGGGgCCGg -3'
miRNA:   3'- -GGC-CUGCuuCuuCUUCUGCCUgGGCg -5'
10789 3' -53.3 NC_002794.1 + 38601 0.78 0.54916
Target:  5'- cCCGGACG-AGAGGccGGACGGGCgCGUc -3'
miRNA:   3'- -GGCCUGCuUCUUCu-UCUGCCUGgGCG- -5'
10789 3' -53.3 NC_002794.1 + 51267 0.78 0.54916
Target:  5'- gCGGGCcGGGAGGcAGGCGcGGCCCGCc -3'
miRNA:   3'- gGCCUGcUUCUUCuUCUGC-CUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 143419 0.77 0.588661
Target:  5'- gCCGGGCGAAGGuccGGAAggccagcauGACGGucacgaGCCCGCc -3'
miRNA:   3'- -GGCCUGCUUCU---UCUU---------CUGCC------UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 138973 0.77 0.628641
Target:  5'- gCGGACGGGuuGGccuGGCGGGCCUGCg -3'
miRNA:   3'- gGCCUGCUUcuUCuu-CUGCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 189953 0.76 0.658676
Target:  5'- cCCGGACGGAcc-GAcGGACGGgccGCCCGCu -3'
miRNA:   3'- -GGCCUGCUUcuuCU-UCUGCC---UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 133635 0.75 0.688527
Target:  5'- gUCGGugGgAAGAAGGucgGGGuCGGACCCGa -3'
miRNA:   3'- -GGCCugC-UUCUUCU---UCU-GCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 183592 0.75 0.698399
Target:  5'- aCGGugGggGcGGAGGG-GGGCCgCGCg -3'
miRNA:   3'- gGCCugCuuCuUCUUCUgCCUGG-GCG- -5'
10789 3' -53.3 NC_002794.1 + 125720 0.75 0.698399
Target:  5'- gCGGAgCGAacGGGAGGAGGCGGAggcgggCCGCg -3'
miRNA:   3'- gGCCU-GCU--UCUUCUUCUGCCUg-----GGCG- -5'
10789 3' -53.3 NC_002794.1 + 143643 0.75 0.717973
Target:  5'- aUGG-CGggGAAGAgcguGGACGGcaGCCCGUu -3'
miRNA:   3'- gGCCuGCuuCUUCU----UCUGCC--UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 145616 0.75 0.727659
Target:  5'- gCGcGACGAGGAGcucggcccGGAGAuCGGACCCGa -3'
miRNA:   3'- gGC-CUGCUUCUU--------CUUCU-GCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 104711 0.75 0.727659
Target:  5'- aCCGG-CGugcacGAGAGGuAGAUGGGCCCGg -3'
miRNA:   3'- -GGCCuGC-----UUCUUCuUCUGCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 145725 0.75 0.737267
Target:  5'- aUCGGGCGcuGGAGgcGGCGGcGCCgGCa -3'
miRNA:   3'- -GGCCUGCuuCUUCuuCUGCC-UGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.