miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 3' -53.3 NC_002794.1 + 14229 0.74 0.746786
Target:  5'- cCCGccGACGAcaGAGGAGACGGAgaCCGCc -3'
miRNA:   3'- -GGC--CUGCUucUUCUUCUGCCUg-GGCG- -5'
10789 3' -53.3 NC_002794.1 + 128403 0.74 0.756209
Target:  5'- aUGGGCGAGGGgaccgGGGAGAcCGGgaugaccgggugGCCCGCg -3'
miRNA:   3'- gGCCUGCUUCU-----UCUUCU-GCC------------UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 187483 0.74 0.7646
Target:  5'- gCCGGGcCGAGGAcGAggccgcgcAGGCGGccagggcGCCCGCg -3'
miRNA:   3'- -GGCCU-GCUUCUuCU--------UCUGCC-------UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 91128 0.74 0.765527
Target:  5'- gCCGugcGugGAGGAGGcgcGGACGGugCUGCu -3'
miRNA:   3'- -GGC---CugCUUCUUCu--UCUGCCugGGCG- -5'
10789 3' -53.3 NC_002794.1 + 7809 0.74 0.774731
Target:  5'- cUCGGAUGAGGAugagcGGGAGGgGGGgCCGUc -3'
miRNA:   3'- -GGCCUGCUUCU-----UCUUCUgCCUgGGCG- -5'
10789 3' -53.3 NC_002794.1 + 62532 0.74 0.774731
Target:  5'- aCCGuGACGAAGAGcccGAcgcccaucCGGACCCGCc -3'
miRNA:   3'- -GGC-CUGCUUCUUcuuCU--------GCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 102946 0.74 0.778379
Target:  5'- aCCGGugGAAGAAGAGGugugugaaagcgagcGCGGcgGCuCCGg -3'
miRNA:   3'- -GGCCugCUUCUUCUUC---------------UGCC--UG-GGCg -5'
10789 3' -53.3 NC_002794.1 + 43993 0.74 0.783814
Target:  5'- gCCGGACGuguGGGAGcacGGCGcGGCCgGCg -3'
miRNA:   3'- -GGCCUGCu--UCUUCuu-CUGC-CUGGgCG- -5'
10789 3' -53.3 NC_002794.1 + 107560 0.74 0.783814
Target:  5'- gCGGugGggGAGGAggaggAGGCGGAgaCgGCg -3'
miRNA:   3'- gGCCugCuuCUUCU-----UCUGCCUg-GgCG- -5'
10789 3' -53.3 NC_002794.1 + 147038 0.74 0.78741
Target:  5'- -aGGACGAAGccGucggcggccggucuaAGGACGGAgCCGCg -3'
miRNA:   3'- ggCCUGCUUCuuC---------------UUCUGCCUgGGCG- -5'
10789 3' -53.3 NC_002794.1 + 10386 0.73 0.801578
Target:  5'- gCC-GACGAucgaGGGGAGGCGGAUCUGCa -3'
miRNA:   3'- -GGcCUGCUuc--UUCUUCUGCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 149347 0.73 0.810244
Target:  5'- gCCGGggucGCGggGgcGuGGACGGAgUCCGCc -3'
miRNA:   3'- -GGCC----UGCuuCuuCuUCUGCCU-GGGCG- -5'
10789 3' -53.3 NC_002794.1 + 94158 0.73 0.813667
Target:  5'- gCUGGACGguGggGggGACGGGgacgaaugugcguuuCCgGCc -3'
miRNA:   3'- -GGCCUGCuuCuuCuuCUGCCU---------------GGgCG- -5'
10789 3' -53.3 NC_002794.1 + 6848 0.73 0.818755
Target:  5'- gCCGGcCGGAGAGGAGGACuccagggaagaaGGACCa-- -3'
miRNA:   3'- -GGCCuGCUUCUUCUUCUG------------CCUGGgcg -5'
10789 3' -53.3 NC_002794.1 + 140676 0.73 0.818755
Target:  5'- gUCGGGCGcAGGucGGugcGACGGACCgGCc -3'
miRNA:   3'- -GGCCUGC-UUCuuCUu--CUGCCUGGgCG- -5'
10789 3' -53.3 NC_002794.1 + 42585 0.73 0.827103
Target:  5'- gCGGACGGAGGAGGGcGCGGcgGCCgggaGCg -3'
miRNA:   3'- gGCCUGCUUCUUCUUcUGCC--UGGg---CG- -5'
10789 3' -53.3 NC_002794.1 + 100821 0.72 0.835282
Target:  5'- gCCGGGCGgcGggGGccggcAGcCGGGCuuCCGCa -3'
miRNA:   3'- -GGCCUGCuuCuuCU-----UCuGCCUG--GGCG- -5'
10789 3' -53.3 NC_002794.1 + 37314 0.72 0.835282
Target:  5'- gCgGGGCaGAAGAcGGAgcGGugGGGCCCGg -3'
miRNA:   3'- -GgCCUG-CUUCU-UCU--UCugCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 44257 0.72 0.843283
Target:  5'- gCCGGGCGGcucGGccgccGggGACGGAggagUCCGCg -3'
miRNA:   3'- -GGCCUGCU---UCuu---CuuCUGCCU----GGGCG- -5'
10789 3' -53.3 NC_002794.1 + 100182 0.72 0.851101
Target:  5'- aCUGGcACGucuuGAAGAAGAUGGGCCaGUg -3'
miRNA:   3'- -GGCC-UGCuu--CUUCUUCUGCCUGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.