miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 3' -53.3 NC_002794.1 + 55495 0.66 0.991834
Target:  5'- cCCGGAacAGGAu---GACGGuCCUGCg -3'
miRNA:   3'- -GGCCUgcUUCUucuuCUGCCuGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 134572 0.66 0.991509
Target:  5'- gCCGGcGCaGAAGGugcuAGAGGAccucgggccgacucCGGAuCCCGCc -3'
miRNA:   3'- -GGCC-UG-CUUCU----UCUUCU--------------GCCU-GGGCG- -5'
10789 3' -53.3 NC_002794.1 + 51328 0.66 0.990708
Target:  5'- aCCGG--GAGGAGGGAaAUGGACCaCGg -3'
miRNA:   3'- -GGCCugCUUCUUCUUcUGCCUGG-GCg -5'
10789 3' -53.3 NC_002794.1 + 10638 0.66 0.990708
Target:  5'- aCGGGCGggGAGc--GGCGcGAgCCCGa -3'
miRNA:   3'- gGCCUGCuuCUUcuuCUGC-CU-GGGCg -5'
10789 3' -53.3 NC_002794.1 + 114009 0.66 0.990708
Target:  5'- gCCGGAgGAgcgacucguacAGgcGggGcaGCGGccGCCCGUa -3'
miRNA:   3'- -GGCCUgCU-----------UCuuCuuC--UGCC--UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 179991 0.66 0.990708
Target:  5'- gCGGugGccGc-GAcGGCGGGCCCGg -3'
miRNA:   3'- gGCCugCuuCuuCUuCUGCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 115828 0.66 0.990708
Target:  5'- cCUGGAuCGgcGggGcccGGCGGGCUCGg -3'
miRNA:   3'- -GGCCU-GCuuCuuCuu-CUGCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 123768 0.66 0.990469
Target:  5'- cCCGGGCGuGGAcgccuccguguuGGAGGCGGugGCgCCGUu -3'
miRNA:   3'- -GGCCUGCuUCUu-----------CUUCUGCC--UG-GGCG- -5'
10789 3' -53.3 NC_002794.1 + 44221 0.66 0.989464
Target:  5'- cUCGGGCGccGAGGGcu-CGGugCCGg -3'
miRNA:   3'- -GGCCUGCuuCUUCUucuGCCugGGCg -5'
10789 3' -53.3 NC_002794.1 + 118831 0.66 0.989464
Target:  5'- -aGGACGAGauGAAGAGcgugucgcuGACGcGCUCGCa -3'
miRNA:   3'- ggCCUGCUU--CUUCUU---------CUGCcUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 114079 0.66 0.989464
Target:  5'- gCGGucgugagccACGAAGAAGucGACGaGCUCGUu -3'
miRNA:   3'- gGCC---------UGCUUCUUCuuCUGCcUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 72214 0.66 0.989464
Target:  5'- gCGGGCGcugucGGAAGAAcacGAUGG-CCgGCa -3'
miRNA:   3'- gGCCUGCu----UCUUCUU---CUGCCuGGgCG- -5'
10789 3' -53.3 NC_002794.1 + 183074 0.66 0.988093
Target:  5'- gCUGGACGGgaacgAGAGcGAGGucgucacguucCGGAuCCCGCa -3'
miRNA:   3'- -GGCCUGCU-----UCUU-CUUCu----------GCCU-GGGCG- -5'
10789 3' -53.3 NC_002794.1 + 181362 0.66 0.988093
Target:  5'- uCCGGccCGGuuGAGGGucACGGGCCCGg -3'
miRNA:   3'- -GGCCu-GCUu-CUUCUucUGCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 183178 0.66 0.988093
Target:  5'- gCCGGuCGggGAccGAGACGcGccGCCaCGCc -3'
miRNA:   3'- -GGCCuGCuuCUucUUCUGC-C--UGG-GCG- -5'
10789 3' -53.3 NC_002794.1 + 86183 0.66 0.988093
Target:  5'- cCCGGGCcGAGcc-GGGACGGAUgcuccgggCCGCg -3'
miRNA:   3'- -GGCCUGcUUCuucUUCUGCCUG--------GGCG- -5'
10789 3' -53.3 NC_002794.1 + 68342 0.66 0.988093
Target:  5'- aCCGGGuucaucCGcc-AAG-AGACGGGCCUGCu -3'
miRNA:   3'- -GGCCU------GCuucUUCuUCUGCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 86375 0.66 0.988093
Target:  5'- cCCGGGCcGAGcc-GGGACGGAUgcuccgggCCGCg -3'
miRNA:   3'- -GGCCUGcUUCuucUUCUGCCUG--------GGCG- -5'
10789 3' -53.3 NC_002794.1 + 123195 0.66 0.988093
Target:  5'- aCGGccGCGucuc-GGAGAUGGACCUGUa -3'
miRNA:   3'- gGCC--UGCuucuuCUUCUGCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 147092 0.66 0.988093
Target:  5'- -aGGACGAAGgcGucGGCGcccGGCCCa- -3'
miRNA:   3'- ggCCUGCUUCuuCuuCUGC---CUGGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.