miRNA display CGI


Results 41 - 60 of 243 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 3' -53.3 NC_002794.1 + 86543 0.66 0.988093
Target:  5'- cCCGGGCcGAGcc-GGGACGGAUgcuccgggCCGCg -3'
miRNA:   3'- -GGCCUGcUUCuucUUCUGCCUG--------GGCG- -5'
10789 3' -53.3 NC_002794.1 + 123195 0.66 0.988093
Target:  5'- aCGGccGCGucuc-GGAGAUGGACCUGUa -3'
miRNA:   3'- gGCC--UGCuucuuCUUCUGCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 86375 0.66 0.988093
Target:  5'- cCCGGGCcGAGcc-GGGACGGAUgcuccgggCCGCg -3'
miRNA:   3'- -GGCCUGcUUCuucUUCUGCCUG--------GGCG- -5'
10789 3' -53.3 NC_002794.1 + 68342 0.66 0.988093
Target:  5'- aCCGGGuucaucCGcc-AAG-AGACGGGCCUGCu -3'
miRNA:   3'- -GGCCU------GCuucUUCuUCUGCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 86183 0.66 0.988093
Target:  5'- cCCGGGCcGAGcc-GGGACGGAUgcuccgggCCGCg -3'
miRNA:   3'- -GGCCUGcUUCuucUUCUGCCUG--------GGCG- -5'
10789 3' -53.3 NC_002794.1 + 183178 0.66 0.988093
Target:  5'- gCCGGuCGggGAccGAGACGcGccGCCaCGCc -3'
miRNA:   3'- -GGCCuGCuuCUucUUCUGC-C--UGG-GCG- -5'
10789 3' -53.3 NC_002794.1 + 94218 0.66 0.986588
Target:  5'- aCGGugGCGgcGAcgGGcGGGCGGGCCgGUg -3'
miRNA:   3'- gGCC--UGCuuCU--UCuUCUGCCUGGgCG- -5'
10789 3' -53.3 NC_002794.1 + 92276 0.66 0.986588
Target:  5'- gCCGGGCGAGGcgcgcAAGGucggcgacgAGGCGGGgCUGg -3'
miRNA:   3'- -GGCCUGCUUC-----UUCU---------UCUGCCUgGGCg -5'
10789 3' -53.3 NC_002794.1 + 43572 0.66 0.986588
Target:  5'- -aGGuCGAGGggGAAGuacGCGGcCaCCGUc -3'
miRNA:   3'- ggCCuGCUUCuuCUUC---UGCCuG-GGCG- -5'
10789 3' -53.3 NC_002794.1 + 100273 0.66 0.986588
Target:  5'- gCUGGAC-AAGAAGAucccgagcuucGGcUGGugCCGCc -3'
miRNA:   3'- -GGCCUGcUUCUUCU-----------UCuGCCugGGCG- -5'
10789 3' -53.3 NC_002794.1 + 121050 0.66 0.986588
Target:  5'- gUCGGGCGccgcGAAGAAgGACGcGAagaaaaCCGCg -3'
miRNA:   3'- -GGCCUGCuu--CUUCUU-CUGC-CUg-----GGCG- -5'
10789 3' -53.3 NC_002794.1 + 142565 0.66 0.986588
Target:  5'- cCCGGAUGGGauAGAGcagcgcGAUGGGCgCGCc -3'
miRNA:   3'- -GGCCUGCUUcuUCUU------CUGCCUGgGCG- -5'
10789 3' -53.3 NC_002794.1 + 36984 0.66 0.986588
Target:  5'- aUCGcGCGcAGGucGGcGAGGCGGACCCGg -3'
miRNA:   3'- -GGCcUGCuUCU--UC-UUCUGCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 110444 0.67 0.98494
Target:  5'- gUCGGugGcGGAGGccGGCGaGCCgGCu -3'
miRNA:   3'- -GGCCugCuUCUUCuuCUGCcUGGgCG- -5'
10789 3' -53.3 NC_002794.1 + 5032 0.67 0.98494
Target:  5'- -gGGugGggGggGGgucaaaaaGGugGGGCCUu- -3'
miRNA:   3'- ggCCugCuuCuuCU--------UCugCCUGGGcg -5'
10789 3' -53.3 NC_002794.1 + 60790 0.67 0.98494
Target:  5'- aCGGACGGcucGGAccauGACGGcGCCCGa -3'
miRNA:   3'- gGCCUGCU---UCUucuuCUGCC-UGGGCg -5'
10789 3' -53.3 NC_002794.1 + 134825 0.67 0.98494
Target:  5'- aUCGGuccagcgacaGCGAcGAAGAAc-CGGGCCCGUu -3'
miRNA:   3'- -GGCC----------UGCUuCUUCUUcuGCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 90943 0.67 0.983143
Target:  5'- gUGGGCGGGcugugcGccGAGGccCGGGCCCGCu -3'
miRNA:   3'- gGCCUGCUU------CuuCUUCu-GCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 139119 0.67 0.983143
Target:  5'- gCGGGCGAucacGGAGACGGcgUCGCg -3'
miRNA:   3'- gGCCUGCUucuuCUUCUGCCugGGCG- -5'
10789 3' -53.3 NC_002794.1 + 15336 0.67 0.983143
Target:  5'- uCCGGACGgcGuGGccAGAUGGAaUCGCa -3'
miRNA:   3'- -GGCCUGCuuCuUCu-UCUGCCUgGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.