miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 3' -53.3 NC_002794.1 + 209 0.69 0.937078
Target:  5'- gCCGGGgGGAGggGGuccAGACGGgacgggaaaacgaaACCCa- -3'
miRNA:   3'- -GGCCUgCUUCuuCU---UCUGCC--------------UGGGcg -5'
10789 3' -53.3 NC_002794.1 + 273 0.68 0.965756
Target:  5'- gCGGACGc-GAGGAcGGCGG-CCCugGCg -3'
miRNA:   3'- gGCCUGCuuCUUCUuCUGCCuGGG--CG- -5'
10789 3' -53.3 NC_002794.1 + 807 0.7 0.933704
Target:  5'- uCCGGGCGGucGGGAGggGGCcuuuuccuccGGucCCCGg -3'
miRNA:   3'- -GGCCUGCU--UCUUCuuCUG----------CCu-GGGCg -5'
10789 3' -53.3 NC_002794.1 + 1428 0.72 0.873389
Target:  5'- -gGGACGAccgGGAGGggGACcgGGGCgCGUu -3'
miRNA:   3'- ggCCUGCU---UCUUCuuCUG--CCUGgGCG- -5'
10789 3' -53.3 NC_002794.1 + 1920 0.66 0.992253
Target:  5'- -gGGGCGuguuccucgccaaaaAAGAAGAAGuccgaGGcGCCCGCc -3'
miRNA:   3'- ggCCUGC---------------UUCUUCUUCug---CC-UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 2896 0.7 0.91458
Target:  5'- aCCGGGCGGcguucuccugggaaaAGGAGAAGcucaaccCGaGCCCGCu -3'
miRNA:   3'- -GGCCUGCU---------------UCUUCUUCu------GCcUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 3031 0.72 0.871242
Target:  5'- aCCGGGCGggGGuuuucgggaaaaagAGAAG-CGGGCCa-- -3'
miRNA:   3'- -GGCCUGCuuCU--------------UCUUCuGCCUGGgcg -5'
10789 3' -53.3 NC_002794.1 + 5032 0.67 0.98494
Target:  5'- -gGGugGggGggGGgucaaaaaGGugGGGCCUu- -3'
miRNA:   3'- ggCCugCuuCuuCU--------UCugCCUGGGcg -5'
10789 3' -53.3 NC_002794.1 + 6134 0.69 0.955377
Target:  5'- gCGGuCGAuc-GGggGGCGGAgCCCGa -3'
miRNA:   3'- gGCCuGCUucuUCuuCUGCCU-GGGCg -5'
10789 3' -53.3 NC_002794.1 + 6848 0.73 0.818755
Target:  5'- gCCGGcCGGAGAGGAGGACuccagggaagaaGGACCa-- -3'
miRNA:   3'- -GGCCuGCUUCUUCUUCUG------------CCUGGgcg -5'
10789 3' -53.3 NC_002794.1 + 7177 0.67 0.976778
Target:  5'- uCCGGugGGgcuGAGGggGGgGGGCUUa- -3'
miRNA:   3'- -GGCCugCUu--CUUCuuCUgCCUGGGcg -5'
10789 3' -53.3 NC_002794.1 + 7809 0.74 0.774731
Target:  5'- cUCGGAUGAGGAugagcGGGAGGgGGGgCCGUc -3'
miRNA:   3'- -GGCCUGCUUCU-----UCUUCUgCCUgGGCG- -5'
10789 3' -53.3 NC_002794.1 + 8298 0.71 0.880411
Target:  5'- uCC-GACGAGGAGGGcgaAGGCGG-CaCCGCc -3'
miRNA:   3'- -GGcCUGCUUCUUCU---UCUGCCuG-GGCG- -5'
10789 3' -53.3 NC_002794.1 + 8828 0.66 0.988093
Target:  5'- gUCGGACGu-GAGGAccaucaugauccAGGCGGcgacccCCUGCg -3'
miRNA:   3'- -GGCCUGCuuCUUCU------------UCUGCCu-----GGGCG- -5'
10789 3' -53.3 NC_002794.1 + 9750 0.68 0.962507
Target:  5'- -aGGugGggGggGGgucAGACcGACCCcggGCa -3'
miRNA:   3'- ggCCugCuuCuuCU---UCUGcCUGGG---CG- -5'
10789 3' -53.3 NC_002794.1 + 10386 0.73 0.801578
Target:  5'- gCC-GACGAucgaGGGGAGGCGGAUCUGCa -3'
miRNA:   3'- -GGcCUGCUuc--UUCUUCUGCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 10638 0.66 0.990708
Target:  5'- aCGGGCGggGAGc--GGCGcGAgCCCGa -3'
miRNA:   3'- gGCCUGCuuCUUcuuCUGC-CU-GGGCg -5'
10789 3' -53.3 NC_002794.1 + 11648 0.69 0.94738
Target:  5'- aCGGGCGGcc--GAcGACGcGGCCCGCc -3'
miRNA:   3'- gGCCUGCUucuuCUuCUGC-CUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 12854 0.67 0.982381
Target:  5'- aCCGaGugGggGAccaccugGGACCCGCa -3'
miRNA:   3'- -GGC-CugCuuCUucuucugCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 13604 0.72 0.851101
Target:  5'- uCCGGGgaGAacuccaagaacuGGAAGAGGACGucGGCCCGUu -3'
miRNA:   3'- -GGCCUg-CU------------UCUUCUUCUGC--CUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.