miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 3' -53.3 NC_002794.1 + 14229 0.74 0.746786
Target:  5'- cCCGccGACGAcaGAGGAGACGGAgaCCGCc -3'
miRNA:   3'- -GGC--CUGCUucUUCUUCUGCCUg-GGCG- -5'
10789 3' -53.3 NC_002794.1 + 14615 0.78 0.529711
Target:  5'- aCCGcGACGggGccGGAGACGGGgCCGg -3'
miRNA:   3'- -GGC-CUGCuuCuuCUUCUGCCUgGGCg -5'
10789 3' -53.3 NC_002794.1 + 15336 0.67 0.983143
Target:  5'- uCCGGACGgcGuGGccAGAUGGAaUCGCa -3'
miRNA:   3'- -GGCCUGCuuCuUCu-UCUGCCUgGGCG- -5'
10789 3' -53.3 NC_002794.1 + 18716 0.71 0.887222
Target:  5'- uCCGGACGucGGAGccGACG-AgCCGCc -3'
miRNA:   3'- -GGCCUGCuuCUUCuuCUGCcUgGGCG- -5'
10789 3' -53.3 NC_002794.1 + 18919 0.68 0.968803
Target:  5'- cCCGGACuGGcgcuGGAucGGuucguGACGGAgaCCCGCg -3'
miRNA:   3'- -GGCCUG-CU----UCU--UCuu---CUGCCU--GGGCG- -5'
10789 3' -53.3 NC_002794.1 + 19459 0.67 0.976778
Target:  5'- aCGaGCGgcGgcGgcGGCgGGACCCGCc -3'
miRNA:   3'- gGCcUGCuuCuuCuuCUG-CCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 21627 0.69 0.954998
Target:  5'- gCCGGgaggacgACGAGGAAGAAGACGaaGAagCgGCg -3'
miRNA:   3'- -GGCC-------UGCUUCUUCUUCUGC--CUg-GgCG- -5'
10789 3' -53.3 NC_002794.1 + 30023 0.69 0.94905
Target:  5'- -aGGACcuGGAGGAGAGagcgcgugaacgaccGAgaccCGGGCCCGCg -3'
miRNA:   3'- ggCCUG--CUUCUUCUU---------------CU----GCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 32602 0.8 0.445897
Target:  5'- gCCGGGgcCGggGccGggGAuCGGGCCCGCc -3'
miRNA:   3'- -GGCCU--GCuuCuuCuuCU-GCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 32630 0.72 0.858728
Target:  5'- nCC-GACGAAGAGGggGGCGacGACCgGg -3'
miRNA:   3'- -GGcCUGCUUCUUCuuCUGC--CUGGgCg -5'
10789 3' -53.3 NC_002794.1 + 33706 0.66 0.991834
Target:  5'- gCGGGCGAGccgcuggucuacGAc-GAGACGGugCUGUa -3'
miRNA:   3'- gGCCUGCUU------------CUucUUCUGCCugGGCG- -5'
10789 3' -53.3 NC_002794.1 + 34848 0.72 0.851101
Target:  5'- gCGGGCGucGGAGcGGgcgccGCGGGCgCCGCg -3'
miRNA:   3'- gGCCUGCuuCUUCuUC-----UGCCUG-GGCG- -5'
10789 3' -53.3 NC_002794.1 + 35970 0.7 0.92662
Target:  5'- aCCGGACGGGcccgcucGCGGACCCGg -3'
miRNA:   3'- -GGCCUGCUUcuucuucUGCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 36984 0.66 0.986588
Target:  5'- aUCGcGCGcAGGucGGcGAGGCGGACCCGg -3'
miRNA:   3'- -GGCcUGCuUCU--UC-UUCUGCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 37314 0.72 0.835282
Target:  5'- gCgGGGCaGAAGAcGGAgcGGugGGGCCCGg -3'
miRNA:   3'- -GgCCUG-CUUCU-UCU--UCugCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 37880 0.67 0.976778
Target:  5'- cUCGGGCGgcGggGGcgguGGCGGcggcagcgGCUCGCc -3'
miRNA:   3'- -GGCCUGCuuCuuCUu---CUGCC--------UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 38445 0.71 0.893817
Target:  5'- gCCGGACuGAGGAGccGGCGcGgCCGCg -3'
miRNA:   3'- -GGCCUGcUUCUUCuuCUGCcUgGGCG- -5'
10789 3' -53.3 NC_002794.1 + 38601 0.78 0.54916
Target:  5'- cCCGGACG-AGAGGccGGACGGGCgCGUc -3'
miRNA:   3'- -GGCCUGCuUCUUCu-UCUGCCUGgGCG- -5'
10789 3' -53.3 NC_002794.1 + 40082 0.71 0.88655
Target:  5'- aCCgGGGCGggGAGGGAaagacaucuugacGACGGggGCgCGCg -3'
miRNA:   3'- -GG-CCUGCuuCUUCUU-------------CUGCC--UGgGCG- -5'
10789 3' -53.3 NC_002794.1 + 42585 0.73 0.827103
Target:  5'- gCGGACGGAGGAGGGcGCGGcgGCCgggaGCg -3'
miRNA:   3'- gGCCUGCUUCUUCUUcUGCC--UGGg---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.