miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 3' -53.3 NC_002794.1 + 191872 0.71 0.899564
Target:  5'- gCCGGcgGCGGAGggGgcGGCGGAggcgggaUCgGCa -3'
miRNA:   3'- -GGCC--UGCUUCuuCuuCUGCCU-------GGgCG- -5'
10789 3' -53.3 NC_002794.1 + 191490 0.69 0.958691
Target:  5'- aCGGGCGAucguccgccaccgAGAGGugccagcgccGGGCGucGGCCCGCg -3'
miRNA:   3'- gGCCUGCU-------------UCUUCu---------UCUGC--CUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 189953 0.76 0.658676
Target:  5'- cCCGGACGGAcc-GAcGGACGGgccGCCCGCu -3'
miRNA:   3'- -GGCCUGCUUcuuCU-UCUGCC---UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 188658 0.71 0.906345
Target:  5'- cCCGGccCGaAAGAAGAAGGCGaagucgucGGCCaCGCg -3'
miRNA:   3'- -GGCCu-GC-UUCUUCUUCUGC--------CUGG-GCG- -5'
10789 3' -53.3 NC_002794.1 + 187773 0.68 0.968803
Target:  5'- gCCGGucgccuCGAccccGGAGGA--ACGG-CCCGCg -3'
miRNA:   3'- -GGCCu-----GCU----UCUUCUucUGCCuGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 187483 0.74 0.7646
Target:  5'- gCCGGGcCGAGGAcGAggccgcgcAGGCGGccagggcGCCCGCg -3'
miRNA:   3'- -GGCCU-GCUUCUuCU--------UCUGCC-------UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 184860 0.71 0.906345
Target:  5'- gCCGGACGGccguucgaacgGGAacauguacccGGGAuACGGGCCCGg -3'
miRNA:   3'- -GGCCUGCU-----------UCU----------UCUUcUGCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 184495 0.71 0.900192
Target:  5'- cCCGGACGcccGGgcGgcG-CGGGcCCCGCg -3'
miRNA:   3'- -GGCCUGCu--UCuuCuuCuGCCU-GGGCG- -5'
10789 3' -53.3 NC_002794.1 + 183592 0.75 0.698399
Target:  5'- aCGGugGggGcGGAGGG-GGGCCgCGCg -3'
miRNA:   3'- gGCCugCuuCuUCUUCUgCCUGG-GCG- -5'
10789 3' -53.3 NC_002794.1 + 183178 0.66 0.988093
Target:  5'- gCCGGuCGggGAccGAGACGcGccGCCaCGCc -3'
miRNA:   3'- -GGCCuGCuuCUucUUCUGC-C--UGG-GCG- -5'
10789 3' -53.3 NC_002794.1 + 183074 0.66 0.988093
Target:  5'- gCUGGACGGgaacgAGAGcGAGGucgucacguucCGGAuCCCGCa -3'
miRNA:   3'- -GGCCUGCU-----UCUU-CUUCu----------GCCU-GGGCG- -5'
10789 3' -53.3 NC_002794.1 + 183034 0.69 0.94738
Target:  5'- cCCGGACGAAGAAGcacgcguAGuagcccaGGucGCUCGCg -3'
miRNA:   3'- -GGCCUGCUUCUUCu------UCug-----CC--UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 182334 0.69 0.955377
Target:  5'- gCGGGCGGGcGAGcGGACGGGCggGCg -3'
miRNA:   3'- gGCCUGCUUcUUCuUCUGCCUGggCG- -5'
10789 3' -53.3 NC_002794.1 + 181437 0.72 0.857974
Target:  5'- gCCGucGGCGAGGGgccgcccGGAGGACGucuuACCCGCg -3'
miRNA:   3'- -GGC--CUGCUUCU-------UCUUCUGCc---UGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 181362 0.66 0.988093
Target:  5'- uCCGGccCGGuuGAGGGucACGGGCCCGg -3'
miRNA:   3'- -GGCCu-GCUu-CUUCUucUGCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 180859 0.7 0.923446
Target:  5'- aCGGccuCGucGGAGgcGGCGGAUCCGg -3'
miRNA:   3'- gGCCu--GCuuCUUCuuCUGCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 180824 0.67 0.981188
Target:  5'- uCUGGGCGggGAGGAGccCGGcgucaCCGUc -3'
miRNA:   3'- -GGCCUGCuuCUUCUUcuGCCug---GGCG- -5'
10789 3' -53.3 NC_002794.1 + 179991 0.66 0.990708
Target:  5'- gCGGugGccGc-GAcGGCGGGCCCGg -3'
miRNA:   3'- gGCCugCuuCuuCUuCUGCCUGGGCg -5'
10789 3' -53.3 NC_002794.1 + 179629 0.81 0.411078
Target:  5'- gCCGGGCGcugcgacggaAAGGAGAagucAGGCGGGCUCGCc -3'
miRNA:   3'- -GGCCUGC----------UUCUUCU----UCUGCCUGGGCG- -5'
10789 3' -53.3 NC_002794.1 + 178785 0.66 0.991834
Target:  5'- ---aACGAAGGgcgGGAAGGCGGcucgGCCCGg -3'
miRNA:   3'- ggccUGCUUCU---UCUUCUGCC----UGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.