miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 5' -55 NC_002794.1 + 129051 0.65 0.973901
Target:  5'- cGGuCGuGGCGCGCGacggugugUCGCGGCUggcggcggaccgUCCg -3'
miRNA:   3'- -CCuGC-UCGUGCGCaa------GGCGUCGA------------AGG- -5'
10789 5' -55 NC_002794.1 + 136150 0.65 0.973901
Target:  5'- aGGACGGGgGCGaagaggaaGUcUUCGguGCUcUCCg -3'
miRNA:   3'- -CCUGCUCgUGCg-------CA-AGGCguCGA-AGG- -5'
10789 5' -55 NC_002794.1 + 130150 0.65 0.973901
Target:  5'- cGGcGCGAGCGCGgGaUCaCGCGcGCgagagCCg -3'
miRNA:   3'- -CC-UGCUCGUGCgCaAG-GCGU-CGaa---GG- -5'
10789 5' -55 NC_002794.1 + 35972 0.65 0.973901
Target:  5'- cGGACGGGCccgcuCGCGgaCC-CGGUUUUa -3'
miRNA:   3'- -CCUGCUCGu----GCGCaaGGcGUCGAAGg -5'
10789 5' -55 NC_002794.1 + 55633 0.65 0.973901
Target:  5'- uGGCcAGCACGCGggCCGgcaGGCgcagCCc -3'
miRNA:   3'- cCUGcUCGUGCGCaaGGCg--UCGaa--GG- -5'
10789 5' -55 NC_002794.1 + 60960 0.65 0.973901
Target:  5'- cGACGAGCGC-CGggCCuacGCGcGCcUCCg -3'
miRNA:   3'- cCUGCUCGUGcGCaaGG---CGU-CGaAGG- -5'
10789 5' -55 NC_002794.1 + 105028 0.65 0.973901
Target:  5'- aGGAUGuGCACGUG--CUGCAGggUCa -3'
miRNA:   3'- -CCUGCuCGUGCGCaaGGCGUCgaAGg -5'
10789 5' -55 NC_002794.1 + 94247 0.65 0.973901
Target:  5'- uGACGgacauguauauaAGCGCGCGUcauuUgCGCGGCgcggCCc -3'
miRNA:   3'- cCUGC------------UCGUGCGCA----AgGCGUCGaa--GG- -5'
10789 5' -55 NC_002794.1 + 72730 0.65 0.973901
Target:  5'- uGACG-GCccCGCGcucCCGCGGCggCCg -3'
miRNA:   3'- cCUGCuCGu-GCGCaa-GGCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 179758 0.65 0.973641
Target:  5'- -cGCGuuGCGCGCGUUCacgagcaCGUAGCgcCCg -3'
miRNA:   3'- ccUGCu-CGUGCGCAAG-------GCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 113150 0.66 0.972311
Target:  5'- cGGGCGcgucagcguguagcGCGCGCGggCgGCGGCggUCg -3'
miRNA:   3'- -CCUGCu-------------CGUGCGCaaGgCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 58952 0.66 0.971213
Target:  5'- aGGACGAGC-CGCucUUCGUGGaggCCg -3'
miRNA:   3'- -CCUGCUCGuGCGcaAGGCGUCgaaGG- -5'
10789 5' -55 NC_002794.1 + 60406 0.66 0.971213
Target:  5'- cGGAgGAGauccuGCGCGccaaCCGCAcGCUcuUCCg -3'
miRNA:   3'- -CCUgCUCg----UGCGCaa--GGCGU-CGA--AGG- -5'
10789 5' -55 NC_002794.1 + 70658 0.66 0.971213
Target:  5'- uGGccuCGuGCGCgGCGgccgCCGCGGCggugacgUCCu -3'
miRNA:   3'- -CCu--GCuCGUG-CGCaa--GGCGUCGa------AGG- -5'
10789 5' -55 NC_002794.1 + 60449 0.66 0.971213
Target:  5'- cGACGAGUaccucACGCGcucCCGCGacuGCaUCCg -3'
miRNA:   3'- cCUGCUCG-----UGCGCaa-GGCGU---CGaAGG- -5'
10789 5' -55 NC_002794.1 + 135274 0.66 0.971213
Target:  5'- aGACGAGCGCGCGagCCGgaCGGgUa-- -3'
miRNA:   3'- cCUGCUCGUGCGCaaGGC--GUCgAagg -5'
10789 5' -55 NC_002794.1 + 125539 0.66 0.971213
Target:  5'- -aACGAGCGCgGCGgca-GCGGUUUCUu -3'
miRNA:   3'- ccUGCUCGUG-CGCaaggCGUCGAAGG- -5'
10789 5' -55 NC_002794.1 + 152785 0.66 0.971213
Target:  5'- aGACGcugaccGCGCGCGagCUGCuGCUcCCg -3'
miRNA:   3'- cCUGCu-----CGUGCGCaaGGCGuCGAaGG- -5'
10789 5' -55 NC_002794.1 + 149629 0.66 0.971213
Target:  5'- gGGACGcGCgauACGCGUggaUGCGGUUcgCCg -3'
miRNA:   3'- -CCUGCuCG---UGCGCAag-GCGUCGAa-GG- -5'
10789 5' -55 NC_002794.1 + 10890 0.66 0.968332
Target:  5'- cGGGCGGGCGgagGUGUUUCGCcacGGCaaCCu -3'
miRNA:   3'- -CCUGCUCGUg--CGCAAGGCG---UCGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.