miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 5' -55 NC_002794.1 + 92062 0.66 0.958472
Target:  5'- cGGCGuGC-CGCGg-CCGguGCUgCCa -3'
miRNA:   3'- cCUGCuCGuGCGCaaGGCguCGAaGG- -5'
10789 5' -55 NC_002794.1 + 190070 0.66 0.958472
Target:  5'- cGGugGAaCACcaggGCGUUCucgucgCGCAGCUcCCa -3'
miRNA:   3'- -CCugCUcGUG----CGCAAG------GCGUCGAaGG- -5'
10789 5' -55 NC_002794.1 + 183036 0.66 0.958472
Target:  5'- cGGACGAagaaGCACGCGUa--GUAGC--CCa -3'
miRNA:   3'- -CCUGCU----CGUGCGCAaggCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 177565 0.66 0.958111
Target:  5'- gGGACGAGCuuCGCGacgCCGUgacucgaaggcucGGCggagCCu -3'
miRNA:   3'- -CCUGCUCGu-GCGCaa-GGCG-------------UCGaa--GG- -5'
10789 5' -55 NC_002794.1 + 184332 0.66 0.965251
Target:  5'- cGGcCGGGgACaGCGacagggUCCGCAGCUcgcagcggcgcUCCc -3'
miRNA:   3'- -CCuGCUCgUG-CGCa-----AGGCGUCGA-----------AGG- -5'
10789 5' -55 NC_002794.1 + 66287 0.66 0.965251
Target:  5'- gGGucCGAGCGCcCGUccgUCCGCccucGCUUCg -3'
miRNA:   3'- -CCu-GCUCGUGcGCA---AGGCGu---CGAAGg -5'
10789 5' -55 NC_002794.1 + 113150 0.66 0.972311
Target:  5'- cGGGCGcgucagcguguagcGCGCGCGggCgGCGGCggUCg -3'
miRNA:   3'- -CCUGCu-------------CGUGCGCaaGgCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 149629 0.66 0.971213
Target:  5'- gGGACGcGCgauACGCGUggaUGCGGUUcgCCg -3'
miRNA:   3'- -CCUGCuCG---UGCGCAag-GCGUCGAa-GG- -5'
10789 5' -55 NC_002794.1 + 152785 0.66 0.971213
Target:  5'- aGACGcugaccGCGCGCGagCUGCuGCUcCCg -3'
miRNA:   3'- cCUGCu-----CGUGCGCaaGGCGuCGAaGG- -5'
10789 5' -55 NC_002794.1 + 125539 0.66 0.971213
Target:  5'- -aACGAGCGCgGCGgca-GCGGUUUCUu -3'
miRNA:   3'- ccUGCUCGUG-CGCaaggCGUCGAAGG- -5'
10789 5' -55 NC_002794.1 + 135274 0.66 0.971213
Target:  5'- aGACGAGCGCGCGagCCGgaCGGgUa-- -3'
miRNA:   3'- cCUGCUCGUGCGCaaGGC--GUCgAagg -5'
10789 5' -55 NC_002794.1 + 60449 0.66 0.971213
Target:  5'- cGACGAGUaccucACGCGcucCCGCGacuGCaUCCg -3'
miRNA:   3'- cCUGCUCG-----UGCGCaa-GGCGU---CGaAGG- -5'
10789 5' -55 NC_002794.1 + 70658 0.66 0.971213
Target:  5'- uGGccuCGuGCGCgGCGgccgCCGCGGCggugacgUCCu -3'
miRNA:   3'- -CCu--GCuCGUG-CGCaa--GGCGUCGa------AGG- -5'
10789 5' -55 NC_002794.1 + 60406 0.66 0.971213
Target:  5'- cGGAgGAGauccuGCGCGccaaCCGCAcGCUcuUCCg -3'
miRNA:   3'- -CCUgCUCg----UGCGCaa--GGCGU-CGA--AGG- -5'
10789 5' -55 NC_002794.1 + 142397 0.66 0.968332
Target:  5'- cGGCGGuGCAgGCGgcgUCgGCGGCg-CCg -3'
miRNA:   3'- cCUGCU-CGUgCGCa--AGgCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 58952 0.66 0.971213
Target:  5'- aGGACGAGC-CGCucUUCGUGGaggCCg -3'
miRNA:   3'- -CCUGCUCGuGCGcaAGGCGUCgaaGG- -5'
10789 5' -55 NC_002794.1 + 10890 0.66 0.968332
Target:  5'- cGGGCGGGCGgagGUGUUUCGCcacGGCaaCCu -3'
miRNA:   3'- -CCUGCUCGUg--CGCAAGGCG---UCGaaGG- -5'
10789 5' -55 NC_002794.1 + 106263 0.66 0.968332
Target:  5'- cGGCGAGCGcCGCGcgUCGC-GCcgCCu -3'
miRNA:   3'- cCUGCUCGU-GCGCaaGGCGuCGaaGG- -5'
10789 5' -55 NC_002794.1 + 96724 0.66 0.966508
Target:  5'- cGGcCGAGCcggcgacgaccgccgGCGCGUcUCGCaAGCggCCg -3'
miRNA:   3'- -CCuGCUCG---------------UGCGCAaGGCG-UCGaaGG- -5'
10789 5' -55 NC_002794.1 + 123873 0.66 0.968033
Target:  5'- cGcCGAGCGgguccagcugcUGCGUUCCGCccgcccgAGCUgCCg -3'
miRNA:   3'- cCuGCUCGU-----------GCGCAAGGCG-------UCGAaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.