miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 5' -55 NC_002794.1 + 81617 1.14 0.002449
Target:  5'- cGGACGAGCACGCGUUCCGCAGCUUCCu -3'
miRNA:   3'- -CCUGCUCGUGCGCAAGGCGUCGAAGG- -5'
10789 5' -55 NC_002794.1 + 69182 0.82 0.281972
Target:  5'- cGGGCGcugauuccGGCACGCGgcCCGCAGCUuggCCa -3'
miRNA:   3'- -CCUGC--------UCGUGCGCaaGGCGUCGAa--GG- -5'
10789 5' -55 NC_002794.1 + 72292 0.78 0.453019
Target:  5'- -aGCGGGCGauCGCGUcCCGCAGCUgCCg -3'
miRNA:   3'- ccUGCUCGU--GCGCAaGGCGUCGAaGG- -5'
10789 5' -55 NC_002794.1 + 133466 0.77 0.484143
Target:  5'- cGGACGGGUAUGCGggcgcgacucuuggcUUUCGCGGCgacccgUCCg -3'
miRNA:   3'- -CCUGCUCGUGCGC---------------AAGGCGUCGa-----AGG- -5'
10789 5' -55 NC_002794.1 + 12713 0.76 0.5336
Target:  5'- --gUGGGCuGCGCGUUCCGCGGCgacgagggcccggUCCg -3'
miRNA:   3'- ccuGCUCG-UGCGCAAGGCGUCGa------------AGG- -5'
10789 5' -55 NC_002794.1 + 142622 0.76 0.537484
Target:  5'- cGGGCGAGUacaGCGCGagCCGCaggggcucgucgGGUUUCCa -3'
miRNA:   3'- -CCUGCUCG---UGCGCaaGGCG------------UCGAAGG- -5'
10789 5' -55 NC_002794.1 + 103929 0.74 0.626723
Target:  5'- cGGCGAGCagcGCGCGUggccgCCGCcGCUcgCCa -3'
miRNA:   3'- cCUGCUCG---UGCGCAa----GGCGuCGAa-GG- -5'
10789 5' -55 NC_002794.1 + 71318 0.74 0.63675
Target:  5'- cGGCGAGCGCGCcaccUCgGCGGCgaugucgUCCg -3'
miRNA:   3'- cCUGCUCGUGCGca--AGgCGUCGa------AGG- -5'
10789 5' -55 NC_002794.1 + 105638 0.74 0.63675
Target:  5'- --cCGAGUACGCGUUcuccgucucgCCGCGGCgcgcUCCg -3'
miRNA:   3'- ccuGCUCGUGCGCAA----------GGCGUCGa---AGG- -5'
10789 5' -55 NC_002794.1 + 40130 0.74 0.656785
Target:  5'- cGGA-GAGcCACGgGcucUCCGCGGCUUCUg -3'
miRNA:   3'- -CCUgCUC-GUGCgCa--AGGCGUCGAAGG- -5'
10789 5' -55 NC_002794.1 + 49943 0.74 0.666777
Target:  5'- uGGACGGGCAgGCGcUCC-CGGUcgCCg -3'
miRNA:   3'- -CCUGCUCGUgCGCaAGGcGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 183108 0.74 0.666777
Target:  5'- cGGAUcccGCACGUGUUCgGCGGCggcUCCc -3'
miRNA:   3'- -CCUGcu-CGUGCGCAAGgCGUCGa--AGG- -5'
10789 5' -55 NC_002794.1 + 94014 0.73 0.676743
Target:  5'- cGGCGGGCcgGCGgGUUCCGcCGGCgggCCc -3'
miRNA:   3'- cCUGCUCG--UGCgCAAGGC-GUCGaa-GG- -5'
10789 5' -55 NC_002794.1 + 87365 0.73 0.676743
Target:  5'- cGGCGAGCG-GCGUUCUggGCGGCgcggCCa -3'
miRNA:   3'- cCUGCUCGUgCGCAAGG--CGUCGaa--GG- -5'
10789 5' -55 NC_002794.1 + 54244 0.73 0.696562
Target:  5'- cGGcCGAGCGCGCGgUCCaCGGCg-CCg -3'
miRNA:   3'- -CCuGCUCGUGCGCaAGGcGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 32283 0.73 0.696562
Target:  5'- cGGCGAGCgACGCcgccgccgCCGCGGCggCCg -3'
miRNA:   3'- cCUGCUCG-UGCGcaa-----GGCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 137313 0.73 0.696562
Target:  5'- uGGACGucCACG-GUUCCGCGGaaggUUCCg -3'
miRNA:   3'- -CCUGCucGUGCgCAAGGCGUCg---AAGG- -5'
10789 5' -55 NC_002794.1 + 68313 0.73 0.706398
Target:  5'- uGGCG-GCcgACGCGUUCCGCGGCcuggugaCCg -3'
miRNA:   3'- cCUGCuCG--UGCGCAAGGCGUCGaa-----GG- -5'
10789 5' -55 NC_002794.1 + 137378 0.73 0.715199
Target:  5'- cGGGCGAGCgccgACGCGggUCCGgucugucCGGCgUCCg -3'
miRNA:   3'- -CCUGCUCG----UGCGCa-AGGC-------GUCGaAGG- -5'
10789 5' -55 NC_002794.1 + 37271 0.73 0.716173
Target:  5'- cGGCGGGCGCGCGgg-CGCGGCguaCa -3'
miRNA:   3'- cCUGCUCGUGCGCaagGCGUCGaagG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.