miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 5' -55 NC_002794.1 + 10890 0.66 0.968332
Target:  5'- cGGGCGGGCGgagGUGUUUCGCcacGGCaaCCu -3'
miRNA:   3'- -CCUGCUCGUg--CGCAAGGCG---UCGaaGG- -5'
10789 5' -55 NC_002794.1 + 142397 0.66 0.968332
Target:  5'- cGGCGGuGCAgGCGgcgUCgGCGGCg-CCg -3'
miRNA:   3'- cCUGCU-CGUgCGCa--AGgCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 123873 0.66 0.968033
Target:  5'- cGcCGAGCGgguccagcugcUGCGUUCCGCccgcccgAGCUgCCg -3'
miRNA:   3'- cCuGCUCGU-----------GCGCAAGGCG-------UCGAaGG- -5'
10789 5' -55 NC_002794.1 + 96724 0.66 0.966508
Target:  5'- cGGcCGAGCcggcgacgaccgccgGCGCGUcUCGCaAGCggCCg -3'
miRNA:   3'- -CCuGCUCG---------------UGCGCAaGGCG-UCGaaGG- -5'
10789 5' -55 NC_002794.1 + 107388 0.66 0.965251
Target:  5'- cGGccguCGGGCugGCGcugauccUCgGCGGCUaugUCCu -3'
miRNA:   3'- -CCu---GCUCGugCGCa------AGgCGUCGA---AGG- -5'
10789 5' -55 NC_002794.1 + 52889 0.66 0.965251
Target:  5'- uGGugGGGUcgaACGCGgcgCCGCcGCcgucgCCg -3'
miRNA:   3'- -CCugCUCG---UGCGCaa-GGCGuCGaa---GG- -5'
10789 5' -55 NC_002794.1 + 193067 0.66 0.965251
Target:  5'- cGGcuGCGGGCcguCGCGggacagCCGCAGCa--- -3'
miRNA:   3'- -CC--UGCUCGu--GCGCaa----GGCGUCGaagg -5'
10789 5' -55 NC_002794.1 + 43995 0.66 0.965251
Target:  5'- cGGACGuGUgggagcacgGCGCGgccggcgUCCGCAGa--CCg -3'
miRNA:   3'- -CCUGCuCG---------UGCGCa------AGGCGUCgaaGG- -5'
10789 5' -55 NC_002794.1 + 184332 0.66 0.965251
Target:  5'- cGGcCGGGgACaGCGacagggUCCGCAGCUcgcagcggcgcUCCc -3'
miRNA:   3'- -CCuGCUCgUG-CGCa-----AGGCGUCGA-----------AGG- -5'
10789 5' -55 NC_002794.1 + 66287 0.66 0.965251
Target:  5'- gGGucCGAGCGCcCGUccgUCCGCccucGCUUCg -3'
miRNA:   3'- -CCu-GCUCGUGcGCA---AGGCGu---CGAAGg -5'
10789 5' -55 NC_002794.1 + 106122 0.66 0.964932
Target:  5'- -uGCGAGCAUGCGcacaucgUCCGCGagaagacgaagcuGCUgaccgCCa -3'
miRNA:   3'- ccUGCUCGUGCGCa------AGGCGU-------------CGAa----GG- -5'
10789 5' -55 NC_002794.1 + 53104 0.66 0.964932
Target:  5'- aGGACcccggcgguuccgGAGCuCGCGUcgaCCGCGGCgcucagCCc -3'
miRNA:   3'- -CCUG-------------CUCGuGCGCAa--GGCGUCGaa----GG- -5'
10789 5' -55 NC_002794.1 + 110616 0.66 0.961966
Target:  5'- cGGAgcggGAGC-CGCGgcgCCGCGGCggCg -3'
miRNA:   3'- -CCUg---CUCGuGCGCaa-GGCGUCGaaGg -5'
10789 5' -55 NC_002794.1 + 15272 0.66 0.961966
Target:  5'- cGGCGAGcCGCGCGgcucccUCCGCgcgAGCgaCUa -3'
miRNA:   3'- cCUGCUC-GUGCGCa-----AGGCG---UCGaaGG- -5'
10789 5' -55 NC_002794.1 + 122560 0.66 0.961966
Target:  5'- uGGACGAGaACGCGca--GCGGCUgCUg -3'
miRNA:   3'- -CCUGCUCgUGCGCaaggCGUCGAaGG- -5'
10789 5' -55 NC_002794.1 + 47323 0.66 0.961966
Target:  5'- gGGugGGGUGCcCGgcucCCGCGGCggcggccUCCg -3'
miRNA:   3'- -CCugCUCGUGcGCaa--GGCGUCGa------AGG- -5'
10789 5' -55 NC_002794.1 + 183036 0.66 0.958472
Target:  5'- cGGACGAagaaGCACGCGUa--GUAGC--CCa -3'
miRNA:   3'- -CCUGCU----CGUGCGCAaggCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 190070 0.66 0.958472
Target:  5'- cGGugGAaCACcaggGCGUUCucgucgCGCAGCUcCCa -3'
miRNA:   3'- -CCugCUcGUG----CGCAAG------GCGUCGAaGG- -5'
10789 5' -55 NC_002794.1 + 92062 0.66 0.958472
Target:  5'- cGGCGuGC-CGCGg-CCGguGCUgCCa -3'
miRNA:   3'- cCUGCuCGuGCGCaaGGCguCGAaGG- -5'
10789 5' -55 NC_002794.1 + 86929 0.66 0.958472
Target:  5'- uGGCGGGCAgGCGgg--GCGGgaUCCg -3'
miRNA:   3'- cCUGCUCGUgCGCaaggCGUCgaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.