miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 5' -55 NC_002794.1 + 177565 0.66 0.958111
Target:  5'- gGGACGAGCuuCGCGacgCCGUgacucgaaggcucGGCggagCCu -3'
miRNA:   3'- -CCUGCUCGu-GCGCaa-GGCG-------------UCGaa--GG- -5'
10789 5' -55 NC_002794.1 + 41874 0.66 0.957382
Target:  5'- aGGGcCGGGCGCugccacgccacguaGCGcUCCaGCAGCgcgCCa -3'
miRNA:   3'- -CCU-GCUCGUG--------------CGCaAGG-CGUCGaa-GG- -5'
10789 5' -55 NC_002794.1 + 187294 0.67 0.956273
Target:  5'- cGGACGGGgucaccaucagauacCACGUcgcgggGUUCCGCAGCc--- -3'
miRNA:   3'- -CCUGCUC---------------GUGCG------CAAGGCGUCGaagg -5'
10789 5' -55 NC_002794.1 + 33233 0.67 0.954763
Target:  5'- cGGACGAGUggaACGCGca-CGcCAGCcUCUu -3'
miRNA:   3'- -CCUGCUCG---UGCGCaagGC-GUCGaAGG- -5'
10789 5' -55 NC_002794.1 + 190580 0.67 0.954763
Target:  5'- -aACGGGUAgcucuCGCG--CCGCAGCUccUCCa -3'
miRNA:   3'- ccUGCUCGU-----GCGCaaGGCGUCGA--AGG- -5'
10789 5' -55 NC_002794.1 + 103984 0.67 0.954763
Target:  5'- cGGGCGAGCuucgcCGCGaagCCGCcgccGGCggaacgccUCCg -3'
miRNA:   3'- -CCUGCUCGu----GCGCaa-GGCG----UCGa-------AGG- -5'
10789 5' -55 NC_002794.1 + 151050 0.67 0.954763
Target:  5'- cGGGCGAGUgcacggccGCGCaggUCGCGGaUUUCCu -3'
miRNA:   3'- -CCUGCUCG--------UGCGcaaGGCGUC-GAAGG- -5'
10789 5' -55 NC_002794.1 + 72833 0.67 0.954381
Target:  5'- cGGACG-GCAgaccaccCGaGaUCCGCGGCUcUCCg -3'
miRNA:   3'- -CCUGCuCGU-------GCgCaAGGCGUCGA-AGG- -5'
10789 5' -55 NC_002794.1 + 102466 0.67 0.950837
Target:  5'- aGAUGcGGCGCGuCGgcgugCCGgcCGGCUUCCa -3'
miRNA:   3'- cCUGC-UCGUGC-GCaa---GGC--GUCGAAGG- -5'
10789 5' -55 NC_002794.1 + 22907 0.67 0.950837
Target:  5'- uGGACG-GCG-GCGa-CCGCGGCcgCCa -3'
miRNA:   3'- -CCUGCuCGUgCGCaaGGCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 22474 0.67 0.950837
Target:  5'- aGAUGAGCACGCacccUCgGUAGCgcuacCCa -3'
miRNA:   3'- cCUGCUCGUGCGca--AGgCGUCGaa---GG- -5'
10789 5' -55 NC_002794.1 + 24006 0.67 0.950837
Target:  5'- cGACGGGC-CGcCGUcaCCGCGGCg-CCu -3'
miRNA:   3'- cCUGCUCGuGC-GCAa-GGCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 122183 0.67 0.950837
Target:  5'- cGGCGcGCGCGUGUgcgaCGCGGCgaagcggugCCg -3'
miRNA:   3'- cCUGCuCGUGCGCAag--GCGUCGaa-------GG- -5'
10789 5' -55 NC_002794.1 + 54334 0.67 0.950837
Target:  5'- aGGaACGgcaccuGGUACGCGUUCCGCGuCUcgauggCCg -3'
miRNA:   3'- -CC-UGC------UCGUGCGCAAGGCGUcGAa-----GG- -5'
10789 5' -55 NC_002794.1 + 141636 0.67 0.946689
Target:  5'- cGACGGGaagGCcgGCGUggCCGCGGCcgCCg -3'
miRNA:   3'- cCUGCUCg--UG--CGCAa-GGCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 185046 0.67 0.946689
Target:  5'- cGGC-AGCAacaGCGUggUCUGCAGCcgCCg -3'
miRNA:   3'- cCUGcUCGUg--CGCA--AGGCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 105976 0.67 0.946689
Target:  5'- cGGACGAGUuuccgguCGCGUUCgaGCcgauGCUgccCCg -3'
miRNA:   3'- -CCUGCUCGu------GCGCAAGg-CGu---CGAa--GG- -5'
10789 5' -55 NC_002794.1 + 72351 0.67 0.946689
Target:  5'- cGGugGcGCugcaccgucuGCGCG-UCCGCGGCcccggCCg -3'
miRNA:   3'- -CCugCuCG----------UGCGCaAGGCGUCGaa---GG- -5'
10789 5' -55 NC_002794.1 + 156004 0.67 0.945832
Target:  5'- cGGACGAGCgACGgGggucucaugggUCGCAGCcgUCg -3'
miRNA:   3'- -CCUGCUCG-UGCgCaa---------GGCGUCGa-AGg -5'
10789 5' -55 NC_002794.1 + 91052 0.67 0.942316
Target:  5'- uGGACgGGGCGCGCGUcgucauguacgCCGUGGUgggCUa -3'
miRNA:   3'- -CCUG-CUCGUGCGCAa----------GGCGUCGaa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.