miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 5' -55 NC_002794.1 + 884 0.68 0.917035
Target:  5'- cGGCGuGCGCGCGggCCgGguGCcaacgCCg -3'
miRNA:   3'- cCUGCuCGUGCGCaaGG-CguCGaa---GG- -5'
10789 5' -55 NC_002794.1 + 10890 0.66 0.968332
Target:  5'- cGGGCGGGCGgagGUGUUUCGCcacGGCaaCCu -3'
miRNA:   3'- -CCUGCUCGUg--CGCAAGGCG---UCGaaGG- -5'
10789 5' -55 NC_002794.1 + 12228 0.69 0.892709
Target:  5'- cGGCG-GCGCcgGCGgcgccgUCCGCGGCgccgaUCCg -3'
miRNA:   3'- cCUGCuCGUG--CGCa-----AGGCGUCGa----AGG- -5'
10789 5' -55 NC_002794.1 + 12416 0.71 0.782187
Target:  5'- cGGACG-GCGCGCGccgacUgGCAGCUgUCCc -3'
miRNA:   3'- -CCUGCuCGUGCGCaa---GgCGUCGA-AGG- -5'
10789 5' -55 NC_002794.1 + 12713 0.76 0.5336
Target:  5'- --gUGGGCuGCGCGUUCCGCGGCgacgagggcccggUCCg -3'
miRNA:   3'- ccuGCUCG-UGCGCAAGGCGUCGa------------AGG- -5'
10789 5' -55 NC_002794.1 + 13102 0.67 0.942316
Target:  5'- gGGACGAGgu-GCGUUCgGCGGggUCg -3'
miRNA:   3'- -CCUGCUCgugCGCAAGgCGUCgaAGg -5'
10789 5' -55 NC_002794.1 + 14635 0.71 0.807849
Target:  5'- gGGGcCGGGCACGgagacgcCGgcgCCGCGGCgucggUCCg -3'
miRNA:   3'- -CCU-GCUCGUGC-------GCaa-GGCGUCGa----AGG- -5'
10789 5' -55 NC_002794.1 + 15272 0.66 0.961966
Target:  5'- cGGCGAGcCGCGCGgcucccUCCGCgcgAGCgaCUa -3'
miRNA:   3'- cCUGCUC-GUGCGCa-----AGGCG---UCGaaGG- -5'
10789 5' -55 NC_002794.1 + 17632 0.7 0.841895
Target:  5'- cGGCGAGCGauccCGCcg-CCGCGGCcgCCg -3'
miRNA:   3'- cCUGCUCGU----GCGcaaGGCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 22474 0.67 0.950837
Target:  5'- aGAUGAGCACGCacccUCgGUAGCgcuacCCa -3'
miRNA:   3'- cCUGCUCGUGCGca--AGgCGUCGaa---GG- -5'
10789 5' -55 NC_002794.1 + 22907 0.67 0.950837
Target:  5'- uGGACG-GCG-GCGa-CCGCGGCcgCCa -3'
miRNA:   3'- -CCUGCuCGUgCGCaaGGCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 23924 0.69 0.879221
Target:  5'- uGGGCGAGCGaGCGaUCCG-AGCccggCCg -3'
miRNA:   3'- -CCUGCUCGUgCGCaAGGCgUCGaa--GG- -5'
10789 5' -55 NC_002794.1 + 24006 0.67 0.950837
Target:  5'- cGACGGGC-CGcCGUcaCCGCGGCg-CCu -3'
miRNA:   3'- cCUGCUCGuGC-GCAa-GGCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 30206 0.72 0.72588
Target:  5'- aGGGCGugauGUACGUGUUCCGUucguacGGCagCCg -3'
miRNA:   3'- -CCUGCu---CGUGCGCAAGGCG------UCGaaGG- -5'
10789 5' -55 NC_002794.1 + 30694 0.7 0.849751
Target:  5'- cGGACGuGCACGU--UCCGcCGGUUguacgCCa -3'
miRNA:   3'- -CCUGCuCGUGCGcaAGGC-GUCGAa----GG- -5'
10789 5' -55 NC_002794.1 + 32283 0.73 0.696562
Target:  5'- cGGCGAGCgACGCcgccgccgCCGCGGCggCCg -3'
miRNA:   3'- cCUGCUCG-UGCGcaa-----GGCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 33233 0.67 0.954763
Target:  5'- cGGACGAGUggaACGCGca-CGcCAGCcUCUu -3'
miRNA:   3'- -CCUGCUCG---UGCGCaagGC-GUCGaAGG- -5'
10789 5' -55 NC_002794.1 + 34856 0.71 0.782187
Target:  5'- cGGAgCGGGCGcCGCGggcgCCGCGGacgCCg -3'
miRNA:   3'- -CCU-GCUCGU-GCGCaa--GGCGUCgaaGG- -5'
10789 5' -55 NC_002794.1 + 35972 0.65 0.973901
Target:  5'- cGGACGGGCccgcuCGCGgaCC-CGGUUUUa -3'
miRNA:   3'- -CCUGCUCGu----GCGCaaGGcGUCGAAGg -5'
10789 5' -55 NC_002794.1 + 37271 0.73 0.716173
Target:  5'- cGGCGGGCGCGCGgg-CGCGGCguaCa -3'
miRNA:   3'- cCUGCUCGUGCGCaagGCGUCGaagG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.