miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 5' -55 NC_002794.1 + 38447 0.7 0.833856
Target:  5'- cGGACugagGAGCcgGCGCGg-CCGCGGCgcgCCc -3'
miRNA:   3'- -CCUG----CUCG--UGCGCaaGGCGUCGaa-GG- -5'
10789 5' -55 NC_002794.1 + 38615 0.68 0.905322
Target:  5'- cGGACGGGCGCGUcccgacucgCCGguGCggCg -3'
miRNA:   3'- -CCUGCUCGUGCGcaa------GGCguCGaaGg -5'
10789 5' -55 NC_002794.1 + 40130 0.74 0.656785
Target:  5'- cGGA-GAGcCACGgGcucUCCGCGGCUUCUg -3'
miRNA:   3'- -CCUgCUC-GUGCgCa--AGGCGUCGAAGG- -5'
10789 5' -55 NC_002794.1 + 41874 0.66 0.957382
Target:  5'- aGGGcCGGGCGCugccacgccacguaGCGcUCCaGCAGCgcgCCa -3'
miRNA:   3'- -CCU-GCUCGUG--------------CGCaAGG-CGUCGaa-GG- -5'
10789 5' -55 NC_002794.1 + 43051 0.68 0.929376
Target:  5'- aGGcCGAGCcggccacccgaaacaGgGCGUUCuCGCAGCUguagcggacgaaaUCCu -3'
miRNA:   3'- -CCuGCUCG---------------UgCGCAAG-GCGUCGA-------------AGG- -5'
10789 5' -55 NC_002794.1 + 43754 0.71 0.808712
Target:  5'- --cUGGGUGC-CGUUCCGCAGCagCCa -3'
miRNA:   3'- ccuGCUCGUGcGCAAGGCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 43995 0.66 0.965251
Target:  5'- cGGACGuGUgggagcacgGCGCGgccggcgUCCGCAGa--CCg -3'
miRNA:   3'- -CCUGCuCG---------UGCGCa------AGGCGUCgaaGG- -5'
10789 5' -55 NC_002794.1 + 44370 0.71 0.817258
Target:  5'- cGGCGGGCGCGaCG-UCCGCGacGCUcgacgcgcccguUCCg -3'
miRNA:   3'- cCUGCUCGUGC-GCaAGGCGU--CGA------------AGG- -5'
10789 5' -55 NC_002794.1 + 44663 0.7 0.857417
Target:  5'- cGACaGGUcCGCG-UCCGCAGCgccaucgUCCa -3'
miRNA:   3'- cCUGcUCGuGCGCaAGGCGUCGa------AGG- -5'
10789 5' -55 NC_002794.1 + 47323 0.66 0.961966
Target:  5'- gGGugGGGUGCcCGgcucCCGCGGCggcggccUCCg -3'
miRNA:   3'- -CCugCUCGUGcGCaa--GGCGUCGa------AGG- -5'
10789 5' -55 NC_002794.1 + 47998 0.67 0.937718
Target:  5'- cGACGAGCGUGCaGUggUCguacaGCAGCUUCg -3'
miRNA:   3'- cCUGCUCGUGCG-CA--AGg----CGUCGAAGg -5'
10789 5' -55 NC_002794.1 + 48580 0.72 0.735509
Target:  5'- uGGGCGAGCcggaggagcgGCGCGUcgCCGuCGGCgucggCCu -3'
miRNA:   3'- -CCUGCUCG----------UGCGCAa-GGC-GUCGaa---GG- -5'
10789 5' -55 NC_002794.1 + 48886 0.69 0.892709
Target:  5'- aGGugGcaGGC-CaGCGUUgCCGCAGCUcggggccgcUCCg -3'
miRNA:   3'- -CCugC--UCGuG-CGCAA-GGCGUCGA---------AGG- -5'
10789 5' -55 NC_002794.1 + 49943 0.74 0.666777
Target:  5'- uGGACGGGCAgGCGcUCC-CGGUcgCCg -3'
miRNA:   3'- -CCUGCUCGUgCGCaAGGcGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 52889 0.66 0.965251
Target:  5'- uGGugGGGUcgaACGCGgcgCCGCcGCcgucgCCg -3'
miRNA:   3'- -CCugCUCG---UGCGCaa-GGCGuCGaa---GG- -5'
10789 5' -55 NC_002794.1 + 53104 0.66 0.964932
Target:  5'- aGGACcccggcgguuccgGAGCuCGCGUcgaCCGCGGCgcucagCCc -3'
miRNA:   3'- -CCUG-------------CUCGuGCGCAa--GGCGUCGaa----GG- -5'
10789 5' -55 NC_002794.1 + 53632 0.72 0.754499
Target:  5'- cGGACGAGguCggccgagccgGCGUUCCGCAaacgguGCU-CCa -3'
miRNA:   3'- -CCUGCUCguG----------CGCAAGGCGU------CGAaGG- -5'
10789 5' -55 NC_002794.1 + 54244 0.73 0.696562
Target:  5'- cGGcCGAGCGCGCGgUCCaCGGCg-CCg -3'
miRNA:   3'- -CCuGCUCGUGCGCaAGGcGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 54334 0.67 0.950837
Target:  5'- aGGaACGgcaccuGGUACGCGUUCCGCGuCUcgauggCCg -3'
miRNA:   3'- -CC-UGC------UCGUGCGCAAGGCGUcGAa-----GG- -5'
10789 5' -55 NC_002794.1 + 54739 0.68 0.92255
Target:  5'- -aGCGAGUugGUG-UCCGUGGCgucgUUCg -3'
miRNA:   3'- ccUGCUCGugCGCaAGGCGUCGa---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.