miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10789 5' -55 NC_002794.1 + 194781 0.7 0.857417
Target:  5'- cGGCcGGCACGCGcgCaGCGGCUcCCa -3'
miRNA:   3'- cCUGcUCGUGCGCaaGgCGUCGAaGG- -5'
10789 5' -55 NC_002794.1 + 193067 0.66 0.965251
Target:  5'- cGGcuGCGGGCcguCGCGggacagCCGCAGCa--- -3'
miRNA:   3'- -CC--UGCUCGu--GCGCaa----GGCGUCGaagg -5'
10789 5' -55 NC_002794.1 + 192279 0.67 0.942316
Target:  5'- cGACGA-CACGCGacCCGgagacCAGCUUCg -3'
miRNA:   3'- cCUGCUcGUGCGCaaGGC-----GUCGAAGg -5'
10789 5' -55 NC_002794.1 + 192002 0.69 0.899127
Target:  5'- gGGACGGuaGCgGCGguggCCGCGGCUgCUg -3'
miRNA:   3'- -CCUGCUcgUG-CGCaa--GGCGUCGAaGG- -5'
10789 5' -55 NC_002794.1 + 191525 0.68 0.905322
Target:  5'- cGGGCGucGGCcCGCGccucccgCCGCAGUcgggUCCg -3'
miRNA:   3'- -CCUGC--UCGuGCGCaa-----GGCGUCGa---AGG- -5'
10789 5' -55 NC_002794.1 + 191368 0.69 0.886073
Target:  5'- gGGACGGGCcggacccucCGCGc-CCGCGGCcgCCc -3'
miRNA:   3'- -CCUGCUCGu--------GCGCaaGGCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 190580 0.67 0.954763
Target:  5'- -aACGGGUAgcucuCGCG--CCGCAGCUccUCCa -3'
miRNA:   3'- ccUGCUCGU-----GCGCaaGGCGUCGA--AGG- -5'
10789 5' -55 NC_002794.1 + 190070 0.66 0.958472
Target:  5'- cGGugGAaCACcaggGCGUUCucgucgCGCAGCUcCCa -3'
miRNA:   3'- -CCugCUcGUG----CGCAAG------GCGUCGAaGG- -5'
10789 5' -55 NC_002794.1 + 187294 0.67 0.956273
Target:  5'- cGGACGGGgucaccaucagauacCACGUcgcgggGUUCCGCAGCc--- -3'
miRNA:   3'- -CCUGCUC---------------GUGCG------CAAGGCGUCGaagg -5'
10789 5' -55 NC_002794.1 + 186785 0.69 0.892709
Target:  5'- -cACGuAGCGCGCGaagCCGCGGUacgccUCCg -3'
miRNA:   3'- ccUGC-UCGUGCGCaa-GGCGUCGa----AGG- -5'
10789 5' -55 NC_002794.1 + 185046 0.67 0.946689
Target:  5'- cGGC-AGCAacaGCGUggUCUGCAGCcgCCg -3'
miRNA:   3'- cCUGcUCGUg--CGCA--AGGCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 184560 0.7 0.833856
Target:  5'- cGGACGccuCACGCGccgCCGCGGCggcggcggCCa -3'
miRNA:   3'- -CCUGCuc-GUGCGCaa-GGCGUCGaa------GG- -5'
10789 5' -55 NC_002794.1 + 184332 0.66 0.965251
Target:  5'- cGGcCGGGgACaGCGacagggUCCGCAGCUcgcagcggcgcUCCc -3'
miRNA:   3'- -CCuGCUCgUG-CGCa-----AGGCGUCGA-----------AGG- -5'
10789 5' -55 NC_002794.1 + 184041 0.67 0.937718
Target:  5'- -cGCGcAGCGCGCGgucgcgggCCGCGGCg--- -3'
miRNA:   3'- ccUGC-UCGUGCGCaa------GGCGUCGaagg -5'
10789 5' -55 NC_002794.1 + 183108 0.74 0.666777
Target:  5'- cGGAUcccGCACGUGUUCgGCGGCggcUCCc -3'
miRNA:   3'- -CCUGcu-CGUGCGCAAGgCGUCGa--AGG- -5'
10789 5' -55 NC_002794.1 + 183036 0.66 0.958472
Target:  5'- cGGACGAagaaGCACGCGUa--GUAGC--CCa -3'
miRNA:   3'- -CCUGCU----CGUGCGCAaggCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 182251 0.67 0.937718
Target:  5'- aGGAgGAGCgacaGCGCGccgagUCCcgaGCGGCcUCCc -3'
miRNA:   3'- -CCUgCUCG----UGCGCa----AGG---CGUCGaAGG- -5'
10789 5' -55 NC_002794.1 + 180004 0.67 0.942316
Target:  5'- cGGCGGGCccggccACGaCGacggCCGCGGCcgUCCg -3'
miRNA:   3'- cCUGCUCG------UGC-GCaa--GGCGUCGa-AGG- -5'
10789 5' -55 NC_002794.1 + 179758 0.65 0.973641
Target:  5'- -cGCGuuGCGCGCGUUCacgagcaCGUAGCgcCCg -3'
miRNA:   3'- ccUGCu-CGUGCGCAAG-------GCGUCGaaGG- -5'
10789 5' -55 NC_002794.1 + 177565 0.66 0.958111
Target:  5'- gGGACGAGCuuCGCGacgCCGUgacucgaaggcucGGCggagCCu -3'
miRNA:   3'- -CCUGCUCGu-GCGCaa-GGCG-------------UCGaa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.