miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1079 3' -49.8 NC_000929.1 + 16151 1.09 0.002362
Target:  5'- gGAACUGGUACGAACAACUGGCAGACGc -3'
miRNA:   3'- -CUUGACCAUGCUUGUUGACCGUCUGC- -5'
1079 3' -49.8 NC_000929.1 + 21369 0.79 0.245732
Target:  5'- -cGCUGGaugauUACGAGCGucACUGGCAGACc -3'
miRNA:   3'- cuUGACC-----AUGCUUGU--UGACCGUCUGc -5'
1079 3' -49.8 NC_000929.1 + 23419 0.72 0.556513
Target:  5'- --cCUGGaugcugGCGAAUGcCUGGCAGGCGg -3'
miRNA:   3'- cuuGACCa-----UGCUUGUuGACCGUCUGC- -5'
1079 3' -49.8 NC_000929.1 + 25267 0.7 0.685652
Target:  5'- -cGCUGGaUGCGAAaccgcaAACgugGGCAGGCa -3'
miRNA:   3'- cuUGACC-AUGCUUg-----UUGa--CCGUCUGc -5'
1079 3' -49.8 NC_000929.1 + 30136 0.69 0.75413
Target:  5'- cGAugUGGUgacagucaGCGGGCcGCUGGCGG-Cu -3'
miRNA:   3'- -CUugACCA--------UGCUUGuUGACCGUCuGc -5'
1079 3' -49.8 NC_000929.1 + 15685 0.68 0.786629
Target:  5'- -cACUGGUAUcaaauACAAUgcccGGCAGGCGg -3'
miRNA:   3'- cuUGACCAUGcu---UGUUGa---CCGUCUGC- -5'
1079 3' -49.8 NC_000929.1 + 13281 0.67 0.835975
Target:  5'- cAGCUGGUuaaaggcGCGGGCAAacagGGCacAGGCGg -3'
miRNA:   3'- cUUGACCA-------UGCUUGUUga--CCG--UCUGC- -5'
1079 3' -49.8 NC_000929.1 + 12130 0.67 0.836925
Target:  5'- cGAugUGGUucGCGGcCAgauugacugGCUGGCAGAg- -3'
miRNA:   3'- -CUugACCA--UGCUuGU---------UGACCGUCUgc -5'
1079 3' -49.8 NC_000929.1 + 4869 0.67 0.845364
Target:  5'- gGAACUGG-ACGGugAugaggguacacuuGCUGGCAugguGGCGu -3'
miRNA:   3'- -CUUGACCaUGCUugU-------------UGACCGU----CUGC- -5'
1079 3' -49.8 NC_000929.1 + 20316 0.67 0.855395
Target:  5'- aGGCUGGgggGCuGGACGuuCUGGguGugGg -3'
miRNA:   3'- cUUGACCa--UG-CUUGUu-GACCguCugC- -5'
1079 3' -49.8 NC_000929.1 + 17497 0.66 0.864231
Target:  5'- gGAACaGGcauuUGAACGGCaGGCAGACc -3'
miRNA:   3'- -CUUGaCCau--GCUUGUUGaCCGUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.