Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1079 | 5' | -52.8 | NC_000929.1 | + | 25145 | 0.66 | 0.685709 |
Target: 5'- aGCGCauCUUUACCcgGUUucaGCCAgcGCCAUa -3' miRNA: 3'- gCGCG--GAAAUGG--CAA---CGGUuuCGGUG- -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 29875 | 0.66 | 0.719948 |
Target: 5'- aGCGCCU--GCCGgguagcugGCCucAGGCC-Cg -3' miRNA: 3'- gCGCGGAaaUGGCaa------CGGu-UUCGGuG- -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 11273 | 0.67 | 0.627661 |
Target: 5'- uGUGCCU--GCCGUUGCUGcugacAGGUUGCg -3' miRNA: 3'- gCGCGGAaaUGGCAACGGU-----UUCGGUG- -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 27457 | 0.67 | 0.635816 |
Target: 5'- uGCGUCUgcugGuuGUUGCCGAccuggaaaaacgcgGGCUGCa -3' miRNA: 3'- gCGCGGAaa--UggCAACGGUU--------------UCGGUG- -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 10261 | 0.67 | 0.63931 |
Target: 5'- gCGuCGCCagUACCGccUGUCccAGCCGCa -3' miRNA: 3'- -GC-GCGGaaAUGGCa-ACGGuuUCGGUG- -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 16876 | 0.67 | 0.662573 |
Target: 5'- aGUGCCUgauCCGUa-CCAAAuGCCGCc -3' miRNA: 3'- gCGCGGAaauGGCAacGGUUU-CGGUG- -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 27638 | 0.68 | 0.592787 |
Target: 5'- gCGgGCCa--GCCGUUGCCAGuuccGGCUg- -3' miRNA: 3'- -GCgCGGaaaUGGCAACGGUU----UCGGug -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 2457 | 0.68 | 0.558246 |
Target: 5'- aGCGUUgUUGCCGguaaagGCUggGGCCAg -3' miRNA: 3'- gCGCGGaAAUGGCaa----CGGuuUCGGUg -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 22124 | 0.68 | 0.558246 |
Target: 5'- aGCGCCgcucCCGUUGCaccuGCUGCg -3' miRNA: 3'- gCGCGGaaauGGCAACGguuuCGGUG- -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 26299 | 0.69 | 0.502106 |
Target: 5'- aCGUGCCUUUGCCGguuguuuuccUGCCu---CCACc -3' miRNA: 3'- -GCGCGGAAAUGGCa---------ACGGuuucGGUG- -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 25458 | 0.69 | 0.546852 |
Target: 5'- cCGCcaGCCguuaUUGCUGUccggGCCAcAGCCGCu -3' miRNA: 3'- -GCG--CGGa---AAUGGCAa---CGGUuUCGGUG- -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 4250 | 0.7 | 0.480336 |
Target: 5'- aCGCucaCCUUUACCGUgaGCCGucauGGCUGCa -3' miRNA: 3'- -GCGc--GGAAAUGGCAa-CGGUu---UCGGUG- -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 22574 | 0.71 | 0.398356 |
Target: 5'- aCGcCGCCacacugugUGCCGUUGCC--AGCCAg -3' miRNA: 3'- -GC-GCGGaa------AUGGCAACGGuuUCGGUg -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 4400 | 0.73 | 0.304565 |
Target: 5'- gCGCGCCUgUAaccaguucugcgcauCCGUUGCCAuuuuuauauuucGGGCCAUc -3' miRNA: 3'- -GCGCGGAaAU---------------GGCAACGGU------------UUCGGUG- -5' |
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1079 | 5' | -52.8 | NC_000929.1 | + | 16185 | 1.09 | 0.000874 |
Target: 5'- cCGCGCCUUUACCGUUGCCAAAGCCACc -3' miRNA: 3'- -GCGCGGAAAUGGCAACGGUUUCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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