miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 3' -59.3 NC_002794.1 + 101857 0.66 0.869239
Target:  5'- aCGAGACgCGcCGCCUGcUGCuCGACa---- -3'
miRNA:   3'- -GCUCUG-GC-GCGGAC-ACG-GCUGcagcu -5'
10790 3' -59.3 NC_002794.1 + 116268 0.66 0.869239
Target:  5'- aCGaAGGCgGCGUCguaguagaacGUGCCGAuCGUCGu -3'
miRNA:   3'- -GC-UCUGgCGCGGa---------CACGGCU-GCAGCu -5'
10790 3' -59.3 NC_002794.1 + 141650 0.66 0.869239
Target:  5'- gCGuGGCCGCgGCC---GCCGGCGggUCGAg -3'
miRNA:   3'- -GCuCUGGCG-CGGacaCGGCUGC--AGCU- -5'
10790 3' -59.3 NC_002794.1 + 187495 0.66 0.869239
Target:  5'- aCGAGGCCGCGCaggcgGCCagGGCGcccgCGGa -3'
miRNA:   3'- -GCUCUGGCGCGgaca-CGG--CUGCa---GCU- -5'
10790 3' -59.3 NC_002794.1 + 89709 0.66 0.862112
Target:  5'- ---aACgGCGCCgcgGUGCCGauccgcgcgGCGUCGGu -3'
miRNA:   3'- gcucUGgCGCGGa--CACGGC---------UGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 86692 0.66 0.862112
Target:  5'- gCGGGACCGaGCCcG-GUCGcuCGUCGAa -3'
miRNA:   3'- -GCUCUGGCgCGGaCaCGGCu-GCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 91055 0.66 0.862112
Target:  5'- aCGGGGCgCGCGUCgucaUGUacGCCGugGUgGGc -3'
miRNA:   3'- -GCUCUG-GCGCGG----ACA--CGGCugCAgCU- -5'
10790 3' -59.3 NC_002794.1 + 143572 0.66 0.862112
Target:  5'- --cGugCGCGCCguccucggcgGcGCUGugGUCGAa -3'
miRNA:   3'- gcuCugGCGCGGa---------CaCGGCugCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 42689 0.66 0.861389
Target:  5'- cCGAGACCGgcgagccCGCCUgaaacaacGUGUgGGCGUCc- -3'
miRNA:   3'- -GCUCUGGC-------GCGGA--------CACGgCUGCAGcu -5'
10790 3' -59.3 NC_002794.1 + 111108 0.66 0.854797
Target:  5'- gCGGGACCGUgGCCgucgacgGcGCCGGCGgcCGGu -3'
miRNA:   3'- -GCUCUGGCG-CGGa------CaCGGCUGCa-GCU- -5'
10790 3' -59.3 NC_002794.1 + 53245 0.66 0.854797
Target:  5'- --cGGCC-CGCCgc-GCCGGCGUCGc -3'
miRNA:   3'- gcuCUGGcGCGGacaCGGCUGCAGCu -5'
10790 3' -59.3 NC_002794.1 + 149228 0.66 0.854797
Target:  5'- gCGAGgcGCCGcCGCCgucGCCGGgGUCGc -3'
miRNA:   3'- -GCUC--UGGC-GCGGacaCGGCUgCAGCu -5'
10790 3' -59.3 NC_002794.1 + 137372 0.66 0.847301
Target:  5'- uCGAG-CCGgGCgaGcGCCGACG-CGGg -3'
miRNA:   3'- -GCUCuGGCgCGgaCaCGGCUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 120070 0.66 0.847301
Target:  5'- gGAGGCCGaCGCggcgGUGgCGGCGaCGAc -3'
miRNA:   3'- gCUCUGGC-GCGga--CACgGCUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 99798 0.66 0.839628
Target:  5'- aCGAG-CgCGCGCCgcggGcGCCGGCGccgUCGGc -3'
miRNA:   3'- -GCUCuG-GCGCGGa---CaCGGCUGC---AGCU- -5'
10790 3' -59.3 NC_002794.1 + 148523 0.66 0.839628
Target:  5'- aGcGGCUGCGCCgcuucccGUGCCu-CGUCGGc -3'
miRNA:   3'- gCuCUGGCGCGGa------CACGGcuGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 106994 0.66 0.839628
Target:  5'- gCGGuGGCgGCGCUg--GCCGACG-CGAc -3'
miRNA:   3'- -GCU-CUGgCGCGGacaCGGCUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 102427 0.66 0.839628
Target:  5'- cCGAGGCCGCcacGCgcaUGUccgaGCUGACGcUCGAg -3'
miRNA:   3'- -GCUCUGGCG---CGg--ACA----CGGCUGC-AGCU- -5'
10790 3' -59.3 NC_002794.1 + 183190 0.66 0.839628
Target:  5'- cCGAGA-CGCGCCgccacGCCGGCGgcgCGu -3'
miRNA:   3'- -GCUCUgGCGCGGaca--CGGCUGCa--GCu -5'
10790 3' -59.3 NC_002794.1 + 137428 0.66 0.838851
Target:  5'- gGAGACCGCGCCgGcGCucuggaaCGAC-UCGGc -3'
miRNA:   3'- gCUCUGGCGCGGaCaCG-------GCUGcAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.