miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 3' -59.3 NC_002794.1 + 81435 1.08 0.002466
Target:  5'- uCGAGACCGCGCCUGUGCCGACGUCGAg -3'
miRNA:   3'- -GCUCUGGCGCGGACACGGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 99765 0.81 0.175936
Target:  5'- aCGuuGCCGcCGCCcgcgGUGCCGGCGUCGAc -3'
miRNA:   3'- -GCucUGGC-GCGGa---CACGGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 45165 0.79 0.20772
Target:  5'- cCGAGACCGCGUCcagcagcGUGCCGAUGUUGu -3'
miRNA:   3'- -GCUCUGGCGCGGa------CACGGCUGCAGCu -5'
10790 3' -59.3 NC_002794.1 + 146982 0.78 0.26759
Target:  5'- gCGAGGuCgGCGCCgccgGCCGACGUCGGc -3'
miRNA:   3'- -GCUCU-GgCGCGGaca-CGGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 51103 0.75 0.355396
Target:  5'- aGAcGACCGCGCCUcGcGCUcgGACGUCGAc -3'
miRNA:   3'- gCU-CUGGCGCGGA-CaCGG--CUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 69897 0.75 0.362934
Target:  5'- aCGAGAgCGCGUagGUGCCGAguuCGUCGAa -3'
miRNA:   3'- -GCUCUgGCGCGgaCACGGCU---GCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 80032 0.74 0.410439
Target:  5'- gGAGACCacuCGCCgacaGUGCCGGCG-CGAg -3'
miRNA:   3'- gCUCUGGc--GCGGa---CACGGCUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 126593 0.74 0.427111
Target:  5'- cCGGGACUgaGCGCCgagGCCGGCGcCGAc -3'
miRNA:   3'- -GCUCUGG--CGCGGacaCGGCUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 65178 0.74 0.427111
Target:  5'- cCGAGACCG-GCggGUGCCGGCGaggUCGGa -3'
miRNA:   3'- -GCUCUGGCgCGgaCACGGCUGC---AGCU- -5'
10790 3' -59.3 NC_002794.1 + 41593 0.74 0.435596
Target:  5'- -cGGACgGCGCCUc-GCCGACGUCGc -3'
miRNA:   3'- gcUCUGgCGCGGAcaCGGCUGCAGCu -5'
10790 3' -59.3 NC_002794.1 + 151776 0.73 0.452853
Target:  5'- gGAGACCGCGCCgcugcacGCCaGACGcCGGg -3'
miRNA:   3'- gCUCUGGCGCGGaca----CGG-CUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 102554 0.72 0.52529
Target:  5'- gGAGACgGCgGCCcugGUGCUGuCGUCGGu -3'
miRNA:   3'- gCUCUGgCG-CGGa--CACGGCuGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 144030 0.72 0.53467
Target:  5'- cCGAGccguaucuCCgGCGCCUG-GCCGcCGUCGAc -3'
miRNA:   3'- -GCUCu-------GG-CGCGGACaCGGCuGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 89928 0.71 0.563142
Target:  5'- aGAGGCgcggGCGCCggcuucucggGaGCCGACGUCGAg -3'
miRNA:   3'- gCUCUGg---CGCGGa---------CaCGGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 182457 0.71 0.601684
Target:  5'- gGAGAgCGCGgCgGUGCgCGGCGUCa- -3'
miRNA:   3'- gCUCUgGCGCgGaCACG-GCUGCAGcu -5'
10790 3' -59.3 NC_002794.1 + 149755 0.7 0.639575
Target:  5'- gCGGGACCGCugucucgGCCUGUuggaGCgGGCGUaCGGg -3'
miRNA:   3'- -GCUCUGGCG-------CGGACA----CGgCUGCA-GCU- -5'
10790 3' -59.3 NC_002794.1 + 118290 0.7 0.640547
Target:  5'- gGGGACCGCGCCgg-GCgCGucgcuCGUCGu -3'
miRNA:   3'- gCUCUGGCGCGGacaCG-GCu----GCAGCu -5'
10790 3' -59.3 NC_002794.1 + 44285 0.7 0.640547
Target:  5'- gGAGuCCGCGCCcGccggGCCGGCGaggCGGg -3'
miRNA:   3'- gCUCuGGCGCGGaCa---CGGCUGCa--GCU- -5'
10790 3' -59.3 NC_002794.1 + 90466 0.7 0.640547
Target:  5'- gCGAGGCCGCGCgCggcgGgGCCGcCGUCc- -3'
miRNA:   3'- -GCUCUGGCGCG-Ga---CaCGGCuGCAGcu -5'
10790 3' -59.3 NC_002794.1 + 112332 0.7 0.640547
Target:  5'- gGGGAgCGCGCCg--GCCGGCGgcgcCGGc -3'
miRNA:   3'- gCUCUgGCGCGGacaCGGCUGCa---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.