miRNA display CGI


Results 21 - 40 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 3' -59.3 NC_002794.1 + 80564 0.7 0.650265
Target:  5'- cCGuu-CCGCGCC-GUGCCGACGcaCGGg -3'
miRNA:   3'- -GCucuGGCGCGGaCACGGCUGCa-GCU- -5'
10790 3' -59.3 NC_002794.1 + 80430 0.7 0.650265
Target:  5'- gCGGGGCCGcCGCCggcgGccGCCGGCccGUCGGc -3'
miRNA:   3'- -GCUCUGGC-GCGGa---Ca-CGGCUG--CAGCU- -5'
10790 3' -59.3 NC_002794.1 + 67557 0.7 0.65997
Target:  5'- -cGGGCCGCGCCgcaccaaaGCCGACcgGUCGGc -3'
miRNA:   3'- gcUCUGGCGCGGaca-----CGGCUG--CAGCU- -5'
10790 3' -59.3 NC_002794.1 + 107267 0.7 0.65997
Target:  5'- gGAG-CCGCGCCguccGCCGcCGUCGc -3'
miRNA:   3'- gCUCuGGCGCGGaca-CGGCuGCAGCu -5'
10790 3' -59.3 NC_002794.1 + 68974 0.69 0.679311
Target:  5'- cCGcGGGCCGCGac---GCCGGCGUCGAc -3'
miRNA:   3'- -GC-UCUGGCGCggacaCGGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 119440 0.69 0.679311
Target:  5'- cCGAcGGCgGCGgCgGUGgCGGCGUCGAc -3'
miRNA:   3'- -GCU-CUGgCGCgGaCACgGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 96511 0.69 0.695644
Target:  5'- aCGAGGCCuuugggaaggagcuGCGCCUcUGCCG-CGcCGAc -3'
miRNA:   3'- -GCUCUGG--------------CGCGGAcACGGCuGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 115178 0.69 0.698513
Target:  5'- gGuAGACgGC-CCgGUGCCGGCgGUCGAg -3'
miRNA:   3'- gC-UCUGgCGcGGaCACGGCUG-CAGCU- -5'
10790 3' -59.3 NC_002794.1 + 58971 0.69 0.698513
Target:  5'- gGAGGCCgaGCGCCUGcGC-GACGaCGAg -3'
miRNA:   3'- gCUCUGG--CGCGGACaCGgCUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 163292 0.69 0.698513
Target:  5'- cCGAGACCGUGUCgGUGuugaauguuaCCGAC-UCGAc -3'
miRNA:   3'- -GCUCUGGCGCGGaCAC----------GGCUGcAGCU- -5'
10790 3' -59.3 NC_002794.1 + 21876 0.69 0.698513
Target:  5'- gCGAGGCCG-GCCgcgggGUGuCCGcggccuGCGUCGGu -3'
miRNA:   3'- -GCUCUGGCgCGGa----CAC-GGC------UGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 14770 0.69 0.708042
Target:  5'- uCGAGGCCGCugagGCCggcgagGCCGGCGUgaccgCGAc -3'
miRNA:   3'- -GCUCUGGCG----CGGaca---CGGCUGCA-----GCU- -5'
10790 3' -59.3 NC_002794.1 + 121427 0.69 0.71089
Target:  5'- cCGGGACCGCgGCCaccaccgagaccacgGCCGcCGUCGGg -3'
miRNA:   3'- -GCUCUGGCG-CGGaca------------CGGCuGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 160120 0.69 0.717514
Target:  5'- cCGAGAUCGCGUUgg-GagCGGCGUCGAc -3'
miRNA:   3'- -GCUCUGGCGCGGacaCg-GCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 63174 0.68 0.735321
Target:  5'- cCGAGGCCGCGaagcggucgcgcuCCUGgGuCUGAcCGUCGAc -3'
miRNA:   3'- -GCUCUGGCGC-------------GGACaC-GGCU-GCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 71227 0.68 0.736251
Target:  5'- --cGGCCGCGUagUGgcgGCCGGCGUgGAc -3'
miRNA:   3'- gcuCUGGCGCGg-ACa--CGGCUGCAgCU- -5'
10790 3' -59.3 NC_002794.1 + 123956 0.68 0.736251
Target:  5'- uGAG-CCGCGCgCagGaGCCGuACGUCGAc -3'
miRNA:   3'- gCUCuGGCGCG-Ga-CaCGGC-UGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 183607 0.68 0.75466
Target:  5'- gGGGGCCGCGCgCg--GCCGGCGcCc- -3'
miRNA:   3'- gCUCUGGCGCG-GacaCGGCUGCaGcu -5'
10790 3' -59.3 NC_002794.1 + 50790 0.68 0.763723
Target:  5'- -cGGGCgGCGCCUccucGcCCGGCGUCGGg -3'
miRNA:   3'- gcUCUGgCGCGGAca--C-GGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 58440 0.68 0.763723
Target:  5'- cCGAGGCCacgcuGCGCCUGgccgcGCUGGCGcugcaCGAc -3'
miRNA:   3'- -GCUCUGG-----CGCGGACa----CGGCUGCa----GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.