miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 3' -59.3 NC_002794.1 + 93744 0.66 0.831785
Target:  5'- gCGAGACCGUGCuCU---UCGACGcCGAc -3'
miRNA:   3'- -GCUCUGGCGCG-GAcacGGCUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 49126 0.66 0.831785
Target:  5'- cCGGGACCG-GCCggagGUCGuuGUCGAc -3'
miRNA:   3'- -GCUCUGGCgCGGaca-CGGCugCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 138406 0.66 0.831785
Target:  5'- uCGAGGUCGuCGCCggccGCCGAcuCGUCGAg -3'
miRNA:   3'- -GCUCUGGC-GCGGaca-CGGCU--GCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 101262 0.66 0.830991
Target:  5'- gGGGGCCgcccccgGCGCCgGUGgCGGCGgCGGg -3'
miRNA:   3'- gCUCUGG-------CGCGGaCACgGCUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 120138 0.67 0.823778
Target:  5'- cCGGGGaCGgGCCgGUGCCGgACGaCGAg -3'
miRNA:   3'- -GCUCUgGCgCGGaCACGGC-UGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 84329 0.67 0.823778
Target:  5'- cCGAGAgC-CGCCUcgaccgaacgGgaaaacGCCGACGUCGAc -3'
miRNA:   3'- -GCUCUgGcGCGGA----------Ca-----CGGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 58308 0.67 0.807299
Target:  5'- aCGAGaccGCCGCGCuCUGcacGCCGcgcgugcuCGUCGGg -3'
miRNA:   3'- -GCUC---UGGCGCG-GACa--CGGCu-------GCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 16438 0.67 0.807299
Target:  5'- cCGAGuCCGCGCUUGUucCCGACucCGAc -3'
miRNA:   3'- -GCUCuGGCGCGGACAc-GGCUGcaGCU- -5'
10790 3' -59.3 NC_002794.1 + 12192 0.67 0.807299
Target:  5'- cCGcGGCCggGCGCCgcucggacGUGCCGgcgGCGUCGGc -3'
miRNA:   3'- -GCuCUGG--CGCGGa-------CACGGC---UGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 133142 0.67 0.807299
Target:  5'- aGAGAUCGUGCgagauCUGcGCCGACGaCGu -3'
miRNA:   3'- gCUCUGGCGCG-----GACaCGGCUGCaGCu -5'
10790 3' -59.3 NC_002794.1 + 145917 0.67 0.798841
Target:  5'- --cGACCGCGCCgagcGgagggGCCGGCGagagCGGu -3'
miRNA:   3'- gcuCUGGCGCGGa---Ca----CGGCUGCa---GCU- -5'
10790 3' -59.3 NC_002794.1 + 187543 0.67 0.798841
Target:  5'- cCGcGACCGcCGCCaccGCCGcCGUCGGg -3'
miRNA:   3'- -GCuCUGGC-GCGGacaCGGCuGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 135747 0.67 0.791112
Target:  5'- ---cGCCGCGCCcucgaggaucaggcgGUGCUGGCuGUCGAg -3'
miRNA:   3'- gcucUGGCGCGGa--------------CACGGCUG-CAGCU- -5'
10790 3' -59.3 NC_002794.1 + 114744 0.67 0.790246
Target:  5'- uCGAGcCgGCGCCgcccGCCGGCGcCGGu -3'
miRNA:   3'- -GCUCuGgCGCGGaca-CGGCUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 121391 0.67 0.781524
Target:  5'- cCGGGACCGCgGCCgGcGCCGGgaccgcgacCGUCGn -3'
miRNA:   3'- -GCUCUGGCG-CGGaCaCGGCU---------GCAGCu -5'
10790 3' -59.3 NC_002794.1 + 188410 0.67 0.781524
Target:  5'- aCGGGACCGcCGCCgcaacUGCCGcagguccuCGUCGu -3'
miRNA:   3'- -GCUCUGGC-GCGGac---ACGGCu-------GCAGCu -5'
10790 3' -59.3 NC_002794.1 + 14633 0.68 0.77268
Target:  5'- aCGGGGCCGggcacggagaCGCCgGcGCCGcgGCGUCGGu -3'
miRNA:   3'- -GCUCUGGC----------GCGGaCaCGGC--UGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 63920 0.68 0.77268
Target:  5'- cCGcGACCGcCGCCcG-GCCGGCGagucUCGAg -3'
miRNA:   3'- -GCuCUGGC-GCGGaCaCGGCUGC----AGCU- -5'
10790 3' -59.3 NC_002794.1 + 30396 0.68 0.77268
Target:  5'- --cGcCCGCGaCgUGaUGCCGugGUCGAa -3'
miRNA:   3'- gcuCuGGCGC-GgAC-ACGGCugCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 92181 0.68 0.763723
Target:  5'- ---aGCCGCuuCCUGUG-CGACGUCGAc -3'
miRNA:   3'- gcucUGGCGc-GGACACgGCUGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.