Results 41 - 60 of 80 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 92181 | 0.68 | 0.763723 |
Target: 5'- ---aGCCGCuuCCUGUG-CGACGUCGAc -3' miRNA: 3'- gcucUGGCGc-GGACACgGCUGCAGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 50790 | 0.68 | 0.763723 |
Target: 5'- -cGGGCgGCGCCUccucGcCCGGCGUCGGg -3' miRNA: 3'- gcUCUGgCGCGGAca--C-GGCUGCAGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 183607 | 0.68 | 0.75466 |
Target: 5'- gGGGGCCGCGCgCg--GCCGGCGcCc- -3' miRNA: 3'- gCUCUGGCGCG-GacaCGGCUGCaGcu -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 123956 | 0.68 | 0.736251 |
Target: 5'- uGAG-CCGCGCgCagGaGCCGuACGUCGAc -3' miRNA: 3'- gCUCuGGCGCG-Ga-CaCGGC-UGCAGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 71227 | 0.68 | 0.736251 |
Target: 5'- --cGGCCGCGUagUGgcgGCCGGCGUgGAc -3' miRNA: 3'- gcuCUGGCGCGg-ACa--CGGCUGCAgCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 63174 | 0.68 | 0.735321 |
Target: 5'- cCGAGGCCGCGaagcggucgcgcuCCUGgGuCUGAcCGUCGAc -3' miRNA: 3'- -GCUCUGGCGC-------------GGACaC-GGCU-GCAGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 160120 | 0.69 | 0.717514 |
Target: 5'- cCGAGAUCGCGUUgg-GagCGGCGUCGAc -3' miRNA: 3'- -GCUCUGGCGCGGacaCg-GCUGCAGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 121427 | 0.69 | 0.71089 |
Target: 5'- cCGGGACCGCgGCCaccaccgagaccacgGCCGcCGUCGGg -3' miRNA: 3'- -GCUCUGGCG-CGGaca------------CGGCuGCAGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 14770 | 0.69 | 0.708042 |
Target: 5'- uCGAGGCCGCugagGCCggcgagGCCGGCGUgaccgCGAc -3' miRNA: 3'- -GCUCUGGCG----CGGaca---CGGCUGCA-----GCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 115178 | 0.69 | 0.698513 |
Target: 5'- gGuAGACgGC-CCgGUGCCGGCgGUCGAg -3' miRNA: 3'- gC-UCUGgCGcGGaCACGGCUG-CAGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 58971 | 0.69 | 0.698513 |
Target: 5'- gGAGGCCgaGCGCCUGcGC-GACGaCGAg -3' miRNA: 3'- gCUCUGG--CGCGGACaCGgCUGCaGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 163292 | 0.69 | 0.698513 |
Target: 5'- cCGAGACCGUGUCgGUGuugaauguuaCCGAC-UCGAc -3' miRNA: 3'- -GCUCUGGCGCGGaCAC----------GGCUGcAGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 21876 | 0.69 | 0.698513 |
Target: 5'- gCGAGGCCG-GCCgcgggGUGuCCGcggccuGCGUCGGu -3' miRNA: 3'- -GCUCUGGCgCGGa----CAC-GGC------UGCAGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 96511 | 0.69 | 0.695644 |
Target: 5'- aCGAGGCCuuugggaaggagcuGCGCCUcUGCCG-CGcCGAc -3' miRNA: 3'- -GCUCUGG--------------CGCGGAcACGGCuGCaGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 68974 | 0.69 | 0.679311 |
Target: 5'- cCGcGGGCCGCGac---GCCGGCGUCGAc -3' miRNA: 3'- -GC-UCUGGCGCggacaCGGCUGCAGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 119440 | 0.69 | 0.679311 |
Target: 5'- cCGAcGGCgGCGgCgGUGgCGGCGUCGAc -3' miRNA: 3'- -GCU-CUGgCGCgGaCACgGCUGCAGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 107267 | 0.7 | 0.65997 |
Target: 5'- gGAG-CCGCGCCguccGCCGcCGUCGc -3' miRNA: 3'- gCUCuGGCGCGGaca-CGGCuGCAGCu -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 67557 | 0.7 | 0.65997 |
Target: 5'- -cGGGCCGCGCCgcaccaaaGCCGACcgGUCGGc -3' miRNA: 3'- gcUCUGGCGCGGaca-----CGGCUG--CAGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 80430 | 0.7 | 0.650265 |
Target: 5'- gCGGGGCCGcCGCCggcgGccGCCGGCccGUCGGc -3' miRNA: 3'- -GCUCUGGC-GCGGa---Ca-CGGCUG--CAGCU- -5' |
|||||||
10790 | 3' | -59.3 | NC_002794.1 | + | 80564 | 0.7 | 0.650265 |
Target: 5'- cCGuu-CCGCGCC-GUGCCGACGcaCGGg -3' miRNA: 3'- -GCucuGGCGCGGaCACGGCUGCa-GCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home