miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 3' -59.3 NC_002794.1 + 12192 0.67 0.807299
Target:  5'- cCGcGGCCggGCGCCgcucggacGUGCCGgcgGCGUCGGc -3'
miRNA:   3'- -GCuCUGG--CGCGGa-------CACGGC---UGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 14633 0.68 0.77268
Target:  5'- aCGGGGCCGggcacggagaCGCCgGcGCCGcgGCGUCGGu -3'
miRNA:   3'- -GCUCUGGC----------GCGGaCaCGGC--UGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 14770 0.69 0.708042
Target:  5'- uCGAGGCCGCugagGCCggcgagGCCGGCGUgaccgCGAc -3'
miRNA:   3'- -GCUCUGGCG----CGGaca---CGGCUGCA-----GCU- -5'
10790 3' -59.3 NC_002794.1 + 16438 0.67 0.807299
Target:  5'- cCGAGuCCGCGCUUGUucCCGACucCGAc -3'
miRNA:   3'- -GCUCuGGCGCGGACAc-GGCUGcaGCU- -5'
10790 3' -59.3 NC_002794.1 + 21876 0.69 0.698513
Target:  5'- gCGAGGCCG-GCCgcgggGUGuCCGcggccuGCGUCGGu -3'
miRNA:   3'- -GCUCUGGCgCGGa----CAC-GGC------UGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 30396 0.68 0.77268
Target:  5'- --cGcCCGCGaCgUGaUGCCGugGUCGAa -3'
miRNA:   3'- gcuCuGGCGC-GgAC-ACGGCugCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 41593 0.74 0.435596
Target:  5'- -cGGACgGCGCCUc-GCCGACGUCGc -3'
miRNA:   3'- gcUCUGgCGCGGAcaCGGCUGCAGCu -5'
10790 3' -59.3 NC_002794.1 + 42689 0.66 0.861389
Target:  5'- cCGAGACCGgcgagccCGCCUgaaacaacGUGUgGGCGUCc- -3'
miRNA:   3'- -GCUCUGGC-------GCGGA--------CACGgCUGCAGcu -5'
10790 3' -59.3 NC_002794.1 + 44285 0.7 0.640547
Target:  5'- gGAGuCCGCGCCcGccggGCCGGCGaggCGGg -3'
miRNA:   3'- gCUCuGGCGCGGaCa---CGGCUGCa--GCU- -5'
10790 3' -59.3 NC_002794.1 + 45165 0.79 0.20772
Target:  5'- cCGAGACCGCGUCcagcagcGUGCCGAUGUUGu -3'
miRNA:   3'- -GCUCUGGCGCGGa------CACGGCUGCAGCu -5'
10790 3' -59.3 NC_002794.1 + 49126 0.66 0.831785
Target:  5'- cCGGGACCG-GCCggagGUCGuuGUCGAc -3'
miRNA:   3'- -GCUCUGGCgCGGaca-CGGCugCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 50790 0.68 0.763723
Target:  5'- -cGGGCgGCGCCUccucGcCCGGCGUCGGg -3'
miRNA:   3'- gcUCUGgCGCGGAca--C-GGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 51103 0.75 0.355396
Target:  5'- aGAcGACCGCGCCUcGcGCUcgGACGUCGAc -3'
miRNA:   3'- gCU-CUGGCGCGGA-CaCGG--CUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 53245 0.66 0.854797
Target:  5'- --cGGCC-CGCCgc-GCCGGCGUCGc -3'
miRNA:   3'- gcuCUGGcGCGGacaCGGCUGCAGCu -5'
10790 3' -59.3 NC_002794.1 + 58308 0.67 0.807299
Target:  5'- aCGAGaccGCCGCGCuCUGcacGCCGcgcgugcuCGUCGGg -3'
miRNA:   3'- -GCUC---UGGCGCG-GACa--CGGCu-------GCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 58440 0.68 0.763723
Target:  5'- cCGAGGCCacgcuGCGCCUGgccgcGCUGGCGcugcaCGAc -3'
miRNA:   3'- -GCUCUGG-----CGCGGACa----CGGCUGCa----GCU- -5'
10790 3' -59.3 NC_002794.1 + 58971 0.69 0.698513
Target:  5'- gGAGGCCgaGCGCCUGcGC-GACGaCGAg -3'
miRNA:   3'- gCUCUGG--CGCGGACaCGgCUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 63174 0.68 0.735321
Target:  5'- cCGAGGCCGCGaagcggucgcgcuCCUGgGuCUGAcCGUCGAc -3'
miRNA:   3'- -GCUCUGGCGC-------------GGACaC-GGCU-GCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 63920 0.68 0.77268
Target:  5'- cCGcGACCGcCGCCcG-GCCGGCGagucUCGAg -3'
miRNA:   3'- -GCuCUGGC-GCGGaCaCGGCUGC----AGCU- -5'
10790 3' -59.3 NC_002794.1 + 65178 0.74 0.427111
Target:  5'- cCGAGACCG-GCggGUGCCGGCGaggUCGGa -3'
miRNA:   3'- -GCUCUGGCgCGgaCACGGCUGC---AGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.