miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 3' -59.3 NC_002794.1 + 67557 0.7 0.65997
Target:  5'- -cGGGCCGCGCCgcaccaaaGCCGACcgGUCGGc -3'
miRNA:   3'- gcUCUGGCGCGGaca-----CGGCUG--CAGCU- -5'
10790 3' -59.3 NC_002794.1 + 68974 0.69 0.679311
Target:  5'- cCGcGGGCCGCGac---GCCGGCGUCGAc -3'
miRNA:   3'- -GC-UCUGGCGCggacaCGGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 69897 0.75 0.362934
Target:  5'- aCGAGAgCGCGUagGUGCCGAguuCGUCGAa -3'
miRNA:   3'- -GCUCUgGCGCGgaCACGGCU---GCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 71227 0.68 0.736251
Target:  5'- --cGGCCGCGUagUGgcgGCCGGCGUgGAc -3'
miRNA:   3'- gcuCUGGCGCGg-ACa--CGGCUGCAgCU- -5'
10790 3' -59.3 NC_002794.1 + 80032 0.74 0.410439
Target:  5'- gGAGACCacuCGCCgacaGUGCCGGCG-CGAg -3'
miRNA:   3'- gCUCUGGc--GCGGa---CACGGCUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 80430 0.7 0.650265
Target:  5'- gCGGGGCCGcCGCCggcgGccGCCGGCccGUCGGc -3'
miRNA:   3'- -GCUCUGGC-GCGGa---Ca-CGGCUG--CAGCU- -5'
10790 3' -59.3 NC_002794.1 + 80564 0.7 0.650265
Target:  5'- cCGuu-CCGCGCC-GUGCCGACGcaCGGg -3'
miRNA:   3'- -GCucuGGCGCGGaCACGGCUGCa-GCU- -5'
10790 3' -59.3 NC_002794.1 + 81435 1.08 0.002466
Target:  5'- uCGAGACCGCGCCUGUGCCGACGUCGAg -3'
miRNA:   3'- -GCUCUGGCGCGGACACGGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 84329 0.67 0.823778
Target:  5'- cCGAGAgC-CGCCUcgaccgaacgGgaaaacGCCGACGUCGAc -3'
miRNA:   3'- -GCUCUgGcGCGGA----------Ca-----CGGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 86692 0.66 0.862112
Target:  5'- gCGGGACCGaGCCcG-GUCGcuCGUCGAa -3'
miRNA:   3'- -GCUCUGGCgCGGaCaCGGCu-GCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 89709 0.66 0.862112
Target:  5'- ---aACgGCGCCgcgGUGCCGauccgcgcgGCGUCGGu -3'
miRNA:   3'- gcucUGgCGCGGa--CACGGC---------UGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 89928 0.71 0.563142
Target:  5'- aGAGGCgcggGCGCCggcuucucggGaGCCGACGUCGAg -3'
miRNA:   3'- gCUCUGg---CGCGGa---------CaCGGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 90466 0.7 0.640547
Target:  5'- gCGAGGCCGCGCgCggcgGgGCCGcCGUCc- -3'
miRNA:   3'- -GCUCUGGCGCG-Ga---CaCGGCuGCAGcu -5'
10790 3' -59.3 NC_002794.1 + 91055 0.66 0.862112
Target:  5'- aCGGGGCgCGCGUCgucaUGUacGCCGugGUgGGc -3'
miRNA:   3'- -GCUCUG-GCGCGG----ACA--CGGCugCAgCU- -5'
10790 3' -59.3 NC_002794.1 + 92181 0.68 0.763723
Target:  5'- ---aGCCGCuuCCUGUG-CGACGUCGAc -3'
miRNA:   3'- gcucUGGCGc-GGACACgGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 93744 0.66 0.831785
Target:  5'- gCGAGACCGUGCuCU---UCGACGcCGAc -3'
miRNA:   3'- -GCUCUGGCGCG-GAcacGGCUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 96511 0.69 0.695644
Target:  5'- aCGAGGCCuuugggaaggagcuGCGCCUcUGCCG-CGcCGAc -3'
miRNA:   3'- -GCUCUGG--------------CGCGGAcACGGCuGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 99765 0.81 0.175936
Target:  5'- aCGuuGCCGcCGCCcgcgGUGCCGGCGUCGAc -3'
miRNA:   3'- -GCucUGGC-GCGGa---CACGGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 99798 0.66 0.839628
Target:  5'- aCGAG-CgCGCGCCgcggGcGCCGGCGccgUCGGc -3'
miRNA:   3'- -GCUCuG-GCGCGGa---CaCGGCUGC---AGCU- -5'
10790 3' -59.3 NC_002794.1 + 101262 0.66 0.830991
Target:  5'- gGGGGCCgcccccgGCGCCgGUGgCGGCGgCGGg -3'
miRNA:   3'- gCUCUGG-------CGCGGaCACgGCUGCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.