miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 3' -59.3 NC_002794.1 + 188410 0.67 0.781524
Target:  5'- aCGGGACCGcCGCCgcaacUGCCGcagguccuCGUCGu -3'
miRNA:   3'- -GCUCUGGC-GCGGac---ACGGCu-------GCAGCu -5'
10790 3' -59.3 NC_002794.1 + 187543 0.67 0.798841
Target:  5'- cCGcGACCGcCGCCaccGCCGcCGUCGGg -3'
miRNA:   3'- -GCuCUGGC-GCGGacaCGGCuGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 187495 0.66 0.869239
Target:  5'- aCGAGGCCGCGCaggcgGCCagGGCGcccgCGGa -3'
miRNA:   3'- -GCUCUGGCGCGgaca-CGG--CUGCa---GCU- -5'
10790 3' -59.3 NC_002794.1 + 183607 0.68 0.75466
Target:  5'- gGGGGCCGCGCgCg--GCCGGCGcCc- -3'
miRNA:   3'- gCUCUGGCGCG-GacaCGGCUGCaGcu -5'
10790 3' -59.3 NC_002794.1 + 183190 0.66 0.839628
Target:  5'- cCGAGA-CGCGCCgccacGCCGGCGgcgCGu -3'
miRNA:   3'- -GCUCUgGCGCGGaca--CGGCUGCa--GCu -5'
10790 3' -59.3 NC_002794.1 + 182457 0.71 0.601684
Target:  5'- gGAGAgCGCGgCgGUGCgCGGCGUCa- -3'
miRNA:   3'- gCUCUgGCGCgGaCACG-GCUGCAGcu -5'
10790 3' -59.3 NC_002794.1 + 163292 0.69 0.698513
Target:  5'- cCGAGACCGUGUCgGUGuugaauguuaCCGAC-UCGAc -3'
miRNA:   3'- -GCUCUGGCGCGGaCAC----------GGCUGcAGCU- -5'
10790 3' -59.3 NC_002794.1 + 160120 0.69 0.717514
Target:  5'- cCGAGAUCGCGUUgg-GagCGGCGUCGAc -3'
miRNA:   3'- -GCUCUGGCGCGGacaCg-GCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 151776 0.73 0.452853
Target:  5'- gGAGACCGCGCCgcugcacGCCaGACGcCGGg -3'
miRNA:   3'- gCUCUGGCGCGGaca----CGG-CUGCaGCU- -5'
10790 3' -59.3 NC_002794.1 + 149755 0.7 0.639575
Target:  5'- gCGGGACCGCugucucgGCCUGUuggaGCgGGCGUaCGGg -3'
miRNA:   3'- -GCUCUGGCG-------CGGACA----CGgCUGCA-GCU- -5'
10790 3' -59.3 NC_002794.1 + 149228 0.66 0.854797
Target:  5'- gCGAGgcGCCGcCGCCgucGCCGGgGUCGc -3'
miRNA:   3'- -GCUC--UGGC-GCGGacaCGGCUgCAGCu -5'
10790 3' -59.3 NC_002794.1 + 148523 0.66 0.839628
Target:  5'- aGcGGCUGCGCCgcuucccGUGCCu-CGUCGGc -3'
miRNA:   3'- gCuCUGGCGCGGa------CACGGcuGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 146982 0.78 0.26759
Target:  5'- gCGAGGuCgGCGCCgccgGCCGACGUCGGc -3'
miRNA:   3'- -GCUCU-GgCGCGGaca-CGGCUGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 145917 0.67 0.798841
Target:  5'- --cGACCGCGCCgagcGgagggGCCGGCGagagCGGu -3'
miRNA:   3'- gcuCUGGCGCGGa---Ca----CGGCUGCa---GCU- -5'
10790 3' -59.3 NC_002794.1 + 144030 0.72 0.53467
Target:  5'- cCGAGccguaucuCCgGCGCCUG-GCCGcCGUCGAc -3'
miRNA:   3'- -GCUCu-------GG-CGCGGACaCGGCuGCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 143572 0.66 0.862112
Target:  5'- --cGugCGCGCCguccucggcgGcGCUGugGUCGAa -3'
miRNA:   3'- gcuCugGCGCGGa---------CaCGGCugCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 141650 0.66 0.869239
Target:  5'- gCGuGGCCGCgGCC---GCCGGCGggUCGAg -3'
miRNA:   3'- -GCuCUGGCG-CGGacaCGGCUGC--AGCU- -5'
10790 3' -59.3 NC_002794.1 + 138406 0.66 0.831785
Target:  5'- uCGAGGUCGuCGCCggccGCCGAcuCGUCGAg -3'
miRNA:   3'- -GCUCUGGC-GCGGaca-CGGCU--GCAGCU- -5'
10790 3' -59.3 NC_002794.1 + 137428 0.66 0.838851
Target:  5'- gGAGACCGCGCCgGcGCucuggaaCGAC-UCGGc -3'
miRNA:   3'- gCUCUGGCGCGGaCaCG-------GCUGcAGCU- -5'
10790 3' -59.3 NC_002794.1 + 137372 0.66 0.847301
Target:  5'- uCGAG-CCGgGCgaGcGCCGACG-CGGg -3'
miRNA:   3'- -GCUCuGGCgCGgaCaCGGCUGCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.