miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 5' -58.5 NC_002794.1 + 195615 0.66 0.869197
Target:  5'- --cUGGCGUCCgGCccaaaCGGCCGGCGa-- -3'
miRNA:   3'- auaGCUGCAGG-CGa----GCCGGUCGCaga -5'
10790 5' -58.5 NC_002794.1 + 63922 0.66 0.869197
Target:  5'- --gCGAcCG-CCGCcCGGCCGGCGagUCUc -3'
miRNA:   3'- auaGCU-GCaGGCGaGCCGGUCGC--AGA- -5'
10790 5' -58.5 NC_002794.1 + 60177 0.66 0.869197
Target:  5'- --cCGcGCGggCGCUCGGCCugccucuucAGCGUCg -3'
miRNA:   3'- auaGC-UGCagGCGAGCCGG---------UCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 49410 0.66 0.869197
Target:  5'- --aCGGCGgCCGCggcggcggCGGCCgucacGGCGUCc -3'
miRNA:   3'- auaGCUGCaGGCGa-------GCCGG-----UCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 84158 0.66 0.869197
Target:  5'- --aCGGCGccUCCuCUCGGCcCAGCGcUCg -3'
miRNA:   3'- auaGCUGC--AGGcGAGCCG-GUCGC-AGa -5'
10790 5' -58.5 NC_002794.1 + 189396 0.66 0.869197
Target:  5'- -cUCGGCcacguaGUCCGCcagGGCCAGCGgguUCUg -3'
miRNA:   3'- auAGCUG------CAGGCGag-CCGGUCGC---AGA- -5'
10790 5' -58.5 NC_002794.1 + 190356 0.66 0.869197
Target:  5'- gGUCGuCGgCCGCgCGGCgCAGCGg-- -3'
miRNA:   3'- aUAGCuGCaGGCGaGCCG-GUCGCaga -5'
10790 5' -58.5 NC_002794.1 + 19512 0.66 0.861922
Target:  5'- gGUCG-CG-CCGCUCGgagcGCCGGCG-Cg -3'
miRNA:   3'- aUAGCuGCaGGCGAGC----CGGUCGCaGa -5'
10790 5' -58.5 NC_002794.1 + 35507 0.66 0.861922
Target:  5'- gGUgGugG-CCGC-CGuGcCCAGCGUCUa -3'
miRNA:   3'- aUAgCugCaGGCGaGC-C-GGUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 65941 0.66 0.861922
Target:  5'- cGUCGGCGgcgguaucgUCGCgagCGGC-GGCGUCUc -3'
miRNA:   3'- aUAGCUGCa--------GGCGa--GCCGgUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 152816 0.66 0.861922
Target:  5'- gAUCGGgGUgCCGUgCGGacaCGGCGUCa -3'
miRNA:   3'- aUAGCUgCA-GGCGaGCCg--GUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 185765 0.66 0.861922
Target:  5'- --cCGGCGcggCCGCccgucacacgUCGGCCGGCG-Cg -3'
miRNA:   3'- auaGCUGCa--GGCG----------AGCCGGUCGCaGa -5'
10790 5' -58.5 NC_002794.1 + 109505 0.66 0.861922
Target:  5'- --aUGACGuuggUCCGCcCGGCCcgcgcucguucGGCGUCg -3'
miRNA:   3'- auaGCUGC----AGGCGaGCCGG-----------UCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 126962 0.66 0.854452
Target:  5'- --gCGACGaCCGCgagagCGGCCGcGUGUUg -3'
miRNA:   3'- auaGCUGCaGGCGa----GCCGGU-CGCAGa -5'
10790 5' -58.5 NC_002794.1 + 49112 0.66 0.854452
Target:  5'- -cUCGGCGUCCuGCaccgggacCGGCCGGagGUCg -3'
miRNA:   3'- auAGCUGCAGG-CGa-------GCCGGUCg-CAGa -5'
10790 5' -58.5 NC_002794.1 + 30558 0.66 0.854452
Target:  5'- gAUCcGCGcCCGCUCGuucGUCAGCGUg- -3'
miRNA:   3'- aUAGcUGCaGGCGAGC---CGGUCGCAga -5'
10790 5' -58.5 NC_002794.1 + 187583 0.66 0.854452
Target:  5'- cGUCGGCGcggCCGCcgUCGcgacgcCCGGCGUCg -3'
miRNA:   3'- aUAGCUGCa--GGCG--AGCc-----GGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 113663 0.66 0.846794
Target:  5'- -cUCGGCGUCCaGCgCGGCgAGCa--- -3'
miRNA:   3'- auAGCUGCAGG-CGaGCCGgUCGcaga -5'
10790 5' -58.5 NC_002794.1 + 99762 0.66 0.846794
Target:  5'- --cCGACGUugCCGC-CGcccgcgguGCCGGCGUCg -3'
miRNA:   3'- auaGCUGCA--GGCGaGC--------CGGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 96745 0.66 0.846794
Target:  5'- --cCGgcGCGUCuCGCaagCGGCCGGCgGUCg -3'
miRNA:   3'- auaGC--UGCAG-GCGa--GCCGGUCG-CAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.