miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 5' -58.5 NC_002794.1 + 63922 0.66 0.869197
Target:  5'- --gCGAcCG-CCGCcCGGCCGGCGagUCUc -3'
miRNA:   3'- auaGCU-GCaGGCGaGCCGGUCGC--AGA- -5'
10790 5' -58.5 NC_002794.1 + 109505 0.66 0.861922
Target:  5'- --aUGACGuuggUCCGCcCGGCCcgcgcucguucGGCGUCg -3'
miRNA:   3'- auaGCUGC----AGGCGaGCCGG-----------UCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 185765 0.66 0.861922
Target:  5'- --cCGGCGcggCCGCccgucacacgUCGGCCGGCG-Cg -3'
miRNA:   3'- auaGCUGCa--GGCG----------AGCCGGUCGCaGa -5'
10790 5' -58.5 NC_002794.1 + 152816 0.66 0.861922
Target:  5'- gAUCGGgGUgCCGUgCGGacaCGGCGUCa -3'
miRNA:   3'- aUAGCUgCA-GGCGaGCCg--GUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 65941 0.66 0.861922
Target:  5'- cGUCGGCGgcgguaucgUCGCgagCGGC-GGCGUCUc -3'
miRNA:   3'- aUAGCUGCa--------GGCGa--GCCGgUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 115601 0.67 0.805886
Target:  5'- gGUCGAC--CCGCUCGcCCGGCGcCg -3'
miRNA:   3'- aUAGCUGcaGGCGAGCcGGUCGCaGa -5'
10790 5' -58.5 NC_002794.1 + 181521 0.67 0.803305
Target:  5'- --aCGuCGUCCGUUCgcccgccgccggcgGGCCGGCGcUCUc -3'
miRNA:   3'- auaGCuGCAGGCGAG--------------CCGGUCGC-AGA- -5'
10790 5' -58.5 NC_002794.1 + 127365 0.67 0.805886
Target:  5'- --gCGGCGcggCCGCUCGuGUCGGCGg-- -3'
miRNA:   3'- auaGCUGCa--GGCGAGC-CGGUCGCaga -5'
10790 5' -58.5 NC_002794.1 + 61550 0.67 0.805886
Target:  5'- --aCGACGccgCCGCggcggCGGCCGcCGUCg -3'
miRNA:   3'- auaGCUGCa--GGCGa----GCCGGUcGCAGa -5'
10790 5' -58.5 NC_002794.1 + 112973 0.67 0.800711
Target:  5'- -cUCGACGgacugCCGCUUGGCCuccugcagcuccaggAGCGa-- -3'
miRNA:   3'- auAGCUGCa----GGCGAGCCGG---------------UCGCaga -5'
10790 5' -58.5 NC_002794.1 + 194825 0.67 0.797232
Target:  5'- --gCGACG-CgCGCUcgCGGcCCGGCGUCUc -3'
miRNA:   3'- auaGCUGCaG-GCGA--GCC-GGUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 121794 0.67 0.805886
Target:  5'- --cCGGCcaCCGCgacCGGCCGGCGcCUg -3'
miRNA:   3'- auaGCUGcaGGCGa--GCCGGUCGCaGA- -5'
10790 5' -58.5 NC_002794.1 + 52916 0.67 0.814393
Target:  5'- cGUCGcCGccgccgUCGCUCGGCCGGCa--- -3'
miRNA:   3'- aUAGCuGCa-----GGCGAGCCGGUCGcaga -5'
10790 5' -58.5 NC_002794.1 + 137132 0.67 0.814393
Target:  5'- cUGUCGucCGUCCGCccgccCGGCCGGCc--- -3'
miRNA:   3'- -AUAGCu-GCAGGCGa----GCCGGUCGcaga -5'
10790 5' -58.5 NC_002794.1 + 71215 0.67 0.814393
Target:  5'- cGUCGAagguccCGgCCGCguaguggCGGCCGGCGUg- -3'
miRNA:   3'- aUAGCU------GCaGGCGa------GCCGGUCGCAga -5'
10790 5' -58.5 NC_002794.1 + 106827 0.67 0.822744
Target:  5'- --gCGuCGUCCggcGCUCGGCCuGCGgCUc -3'
miRNA:   3'- auaGCuGCAGG---CGAGCCGGuCGCaGA- -5'
10790 5' -58.5 NC_002794.1 + 116073 0.67 0.830933
Target:  5'- gGUCG-CGgagCGCUCGGCgCGGCgGUCg -3'
miRNA:   3'- aUAGCuGCag-GCGAGCCG-GUCG-CAGa -5'
10790 5' -58.5 NC_002794.1 + 114198 0.67 0.830933
Target:  5'- --gCGGCG-CCa--CGGCCGGCGUCUc -3'
miRNA:   3'- auaGCUGCaGGcgaGCCGGUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 88792 0.67 0.830122
Target:  5'- gAUCGugaacgggcaaacGCGUucCCGUUCGGCUaAGCGUCc -3'
miRNA:   3'- aUAGC-------------UGCA--GGCGAGCCGG-UCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 150835 0.67 0.797232
Target:  5'- gAUCGuCGUCagcuccaGCggCGGCC-GCGUCUa -3'
miRNA:   3'- aUAGCuGCAGg------CGa-GCCGGuCGCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.