miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 5' -58.5 NC_002794.1 + 81470 1.05 0.003892
Target:  5'- aUAUCGACGUCCGCUCGGCCAGCGUCUc -3'
miRNA:   3'- -AUAGCUGCAGGCGAGCCGGUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 61821 0.78 0.253059
Target:  5'- --cCGGCGgCCGCcggCGGCCGGCGUCa -3'
miRNA:   3'- auaGCUGCaGGCGa--GCCGGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 86959 0.78 0.26504
Target:  5'- cGUCGACGUCCGCUgCGGCgAGCu--- -3'
miRNA:   3'- aUAGCUGCAGGCGA-GCCGgUCGcaga -5'
10790 5' -58.5 NC_002794.1 + 96596 0.75 0.377555
Target:  5'- cGUCGACgGUCCGCUCuuucuguacgcgGGCggCGGCGUCUg -3'
miRNA:   3'- aUAGCUG-CAGGCGAG------------CCG--GUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 53964 0.75 0.383154
Target:  5'- -cUCGcGCGUCCGCUccguccggcugcccCGcGCCAGCGUCUc -3'
miRNA:   3'- auAGC-UGCAGGCGA--------------GC-CGGUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 14521 0.75 0.393697
Target:  5'- -cUCGugGcgCCGCUCGGCCacGGCGcUCUc -3'
miRNA:   3'- auAGCugCa-GGCGAGCCGG--UCGC-AGA- -5'
10790 5' -58.5 NC_002794.1 + 146986 0.74 0.42729
Target:  5'- gGUCGGCG-CCGC-CGGCCGaCGUCg -3'
miRNA:   3'- aUAGCUGCaGGCGaGCCGGUcGCAGa -5'
10790 5' -58.5 NC_002794.1 + 38071 0.73 0.457139
Target:  5'- -cUCGACGUCCGuCUCGGacacggucagcgcgaCCGGCGUg- -3'
miRNA:   3'- auAGCUGCAGGC-GAGCC---------------GGUCGCAga -5'
10790 5' -58.5 NC_002794.1 + 113288 0.73 0.462522
Target:  5'- --cCG-CGUCUGCUCGGCgCAGCGcUCg -3'
miRNA:   3'- auaGCuGCAGGCGAGCCG-GUCGC-AGa -5'
10790 5' -58.5 NC_002794.1 + 57406 0.73 0.480701
Target:  5'- --cCGGCGcCCGCgUGGCCGGCGUgCUg -3'
miRNA:   3'- auaGCUGCaGGCGaGCCGGUCGCA-GA- -5'
10790 5' -58.5 NC_002794.1 + 116938 0.72 0.508601
Target:  5'- cGUCGGCGUCC-C-CGGCggCGGCGUCg -3'
miRNA:   3'- aUAGCUGCAGGcGaGCCG--GUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 67391 0.71 0.566254
Target:  5'- cGUCGGCG-CCaGCgUCGgcGCCAGCGUCg -3'
miRNA:   3'- aUAGCUGCaGG-CG-AGC--CGGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 26631 0.71 0.593762
Target:  5'- cGUCcGCGUCCGCgcacccggacggCGGCCGGCucGUCg -3'
miRNA:   3'- aUAGcUGCAGGCGa-----------GCCGGUCG--CAGa -5'
10790 5' -58.5 NC_002794.1 + 107519 0.71 0.605623
Target:  5'- gGUCGACG-CCGa-CGGCCGGCG-Cg -3'
miRNA:   3'- aUAGCUGCaGGCgaGCCGGUCGCaGa -5'
10790 5' -58.5 NC_002794.1 + 61884 0.7 0.625443
Target:  5'- cGUCGGCG-CCGCgCGGCgAGCG-Cg -3'
miRNA:   3'- aUAGCUGCaGGCGaGCCGgUCGCaGa -5'
10790 5' -58.5 NC_002794.1 + 188035 0.7 0.642309
Target:  5'- -cUCGcCGUCCcggacGCggcgagucucgacuUCGGCCAGCGUCa -3'
miRNA:   3'- auAGCuGCAGG-----CG--------------AGCCGGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 53593 0.7 0.655193
Target:  5'- gUGUCGGCGUCgGCgucaccgGGCCgccgcAGCGUCg -3'
miRNA:   3'- -AUAGCUGCAGgCGag-----CCGG-----UCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 151837 0.69 0.674951
Target:  5'- --cCGACG-CCGUUCGGCgaGGCGUUc -3'
miRNA:   3'- auaGCUGCaGGCGAGCCGg-UCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 76821 0.69 0.694578
Target:  5'- ---gGACGUCaCGCcagCGGCCGGCGa-- -3'
miRNA:   3'- auagCUGCAG-GCGa--GCCGGUCGCaga -5'
10790 5' -58.5 NC_002794.1 + 14768 0.69 0.694578
Target:  5'- cGUCGAgG-CCGCUgaGGCCGGCGa-- -3'
miRNA:   3'- aUAGCUgCaGGCGAg-CCGGUCGCaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.