miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 5' -58.5 NC_002794.1 + 116667 0.69 0.704322
Target:  5'- ---aGGCG-CUGCUCGGCgAGCGUg- -3'
miRNA:   3'- auagCUGCaGGCGAGCCGgUCGCAga -5'
10790 5' -58.5 NC_002794.1 + 187421 0.69 0.704322
Target:  5'- -cUCGAgCGUCUGCUggaaGGCCAGCcgcgccGUCUg -3'
miRNA:   3'- auAGCU-GCAGGCGAg---CCGGUCG------CAGA- -5'
10790 5' -58.5 NC_002794.1 + 111121 0.69 0.704322
Target:  5'- cGUCGACGgcgCCGg-CGGCCGGUG-CUc -3'
miRNA:   3'- aUAGCUGCa--GGCgaGCCGGUCGCaGA- -5'
10790 5' -58.5 NC_002794.1 + 119478 0.69 0.714009
Target:  5'- -uUCGACGUCuUGgUCGGCU-GCGUCc -3'
miRNA:   3'- auAGCUGCAG-GCgAGCCGGuCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 137408 0.69 0.714974
Target:  5'- --cCGGCGUCCGCggacgccgcggagacCGcGCCGGCGcUCUg -3'
miRNA:   3'- auaGCUGCAGGCGa--------------GC-CGGUCGC-AGA- -5'
10790 5' -58.5 NC_002794.1 + 113265 0.69 0.72363
Target:  5'- --gCGucCGcCCGCUCGGCCAGCu--- -3'
miRNA:   3'- auaGCu-GCaGGCGAGCCGGUCGcaga -5'
10790 5' -58.5 NC_002794.1 + 119677 0.69 0.727458
Target:  5'- --cCGGCGUCCccggcgucuccggcuGCUgGGCCGGCGg-- -3'
miRNA:   3'- auaGCUGCAGG---------------CGAgCCGGUCGCaga -5'
10790 5' -58.5 NC_002794.1 + 18795 0.68 0.742642
Target:  5'- -cUCGACGgccCCGC-CGGCCAacGgGUCg -3'
miRNA:   3'- auAGCUGCa--GGCGaGCCGGU--CgCAGa -5'
10790 5' -58.5 NC_002794.1 + 188352 0.68 0.742642
Target:  5'- cGUCG-CGcCCGUcCGGCCGGCGg-- -3'
miRNA:   3'- aUAGCuGCaGGCGaGCCGGUCGCaga -5'
10790 5' -58.5 NC_002794.1 + 72365 0.68 0.742642
Target:  5'- cGUCugcGCGUCCGCggcccCGGCCGuCGUCUu -3'
miRNA:   3'- aUAGc--UGCAGGCGa----GCCGGUcGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 143101 0.68 0.752016
Target:  5'- --gCGGCGUguuccagccCCGCUCGGCCguGGCG-Ca -3'
miRNA:   3'- auaGCUGCA---------GGCGAGCCGG--UCGCaGa -5'
10790 5' -58.5 NC_002794.1 + 112268 0.68 0.761291
Target:  5'- --cCGGCGUCuCGUccUCGGCCuccGUGUCg -3'
miRNA:   3'- auaGCUGCAG-GCG--AGCCGGu--CGCAGa -5'
10790 5' -58.5 NC_002794.1 + 18634 0.68 0.770458
Target:  5'- --cCGACGcCCGCUCcGCCGGCa--- -3'
miRNA:   3'- auaGCUGCaGGCGAGcCGGUCGcaga -5'
10790 5' -58.5 NC_002794.1 + 71848 0.68 0.770458
Target:  5'- cGUCGACGggaccucaCCGC-CGGCCAGacuccgcucgaCGUCg -3'
miRNA:   3'- aUAGCUGCa-------GGCGaGCCGGUC-----------GCAGa -5'
10790 5' -58.5 NC_002794.1 + 193805 0.68 0.779509
Target:  5'- --cCGGCGcCCGCUCGucuggcGCCGacGCGUCg -3'
miRNA:   3'- auaGCUGCaGGCGAGC------CGGU--CGCAGa -5'
10790 5' -58.5 NC_002794.1 + 117198 0.68 0.779509
Target:  5'- gAUCGGCGUcgggcccgggCgGCUcCGGCC-GCGUCa -3'
miRNA:   3'- aUAGCUGCA----------GgCGA-GCCGGuCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 10305 0.68 0.779509
Target:  5'- cGUCGGCGagagacUCCGacgaCUCGGCCGuCGUCg -3'
miRNA:   3'- aUAGCUGC------AGGC----GAGCCGGUcGCAGa -5'
10790 5' -58.5 NC_002794.1 + 104260 0.68 0.779509
Target:  5'- -cUCGGgcagCCGCUCGGCCGGCa--- -3'
miRNA:   3'- auAGCUgca-GGCGAGCCGGUCGcaga -5'
10790 5' -58.5 NC_002794.1 + 182081 0.68 0.779509
Target:  5'- gGUCGGCcaCCGC-CaGCCAGCGUUc -3'
miRNA:   3'- aUAGCUGcaGGCGaGcCGGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 36483 0.67 0.787549
Target:  5'- -cUCGGCGUUcucguacaggcagCGCaccaccUCGGCCAGCGUg- -3'
miRNA:   3'- auAGCUGCAG-------------GCG------AGCCGGUCGCAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.