Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10790 | 5' | -58.5 | NC_002794.1 | + | 48875 | 0.67 | 0.797232 |
Target: 5'- cGUCGGCGgCCagGUggcaGGCCAGCGUUg -3' miRNA: 3'- aUAGCUGCaGG--CGag--CCGGUCGCAGa -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 143015 | 0.67 | 0.797232 |
Target: 5'- gGUCaGCGUgCGgUCGGCCGG-GUCg -3' miRNA: 3'- aUAGcUGCAgGCgAGCCGGUCgCAGa -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 150835 | 0.67 | 0.797232 |
Target: 5'- gAUCGuCGUCagcuccaGCggCGGCC-GCGUCUa -3' miRNA: 3'- aUAGCuGCAGg------CGa-GCCGGuCGCAGA- -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 194825 | 0.67 | 0.797232 |
Target: 5'- --gCGACG-CgCGCUcgCGGcCCGGCGUCUc -3' miRNA: 3'- auaGCUGCaG-GCGA--GCC-GGUCGCAGA- -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 58340 | 0.67 | 0.788436 |
Target: 5'- -cUCGuCGggaaccugCCGCUCGGCCuGGCGcCg -3' miRNA: 3'- auAGCuGCa-------GGCGAGCCGG-UCGCaGa -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 191800 | 0.67 | 0.788436 |
Target: 5'- -cUCGAcCGcCCGCUCGGCC-GC-UCg -3' miRNA: 3'- auAGCU-GCaGGCGAGCCGGuCGcAGa -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 146221 | 0.67 | 0.788436 |
Target: 5'- -cUCGuCGUCCucCUCGGUCgcGGCGUCg -3' miRNA: 3'- auAGCuGCAGGc-GAGCCGG--UCGCAGa -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 53243 | 0.67 | 0.788436 |
Target: 5'- -cUCGGC--CCGC-CGcGCCGGCGUCg -3' miRNA: 3'- auAGCUGcaGGCGaGC-CGGUCGCAGa -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 67220 | 0.67 | 0.788436 |
Target: 5'- -cUCGGCG-CCGggCGGCUAaccGCGUCUc -3' miRNA: 3'- auAGCUGCaGGCgaGCCGGU---CGCAGA- -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 36483 | 0.67 | 0.787549 |
Target: 5'- -cUCGGCGUUcucguacaggcagCGCaccaccUCGGCCAGCGUg- -3' miRNA: 3'- auAGCUGCAG-------------GCG------AGCCGGUCGCAga -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 117198 | 0.68 | 0.779509 |
Target: 5'- gAUCGGCGUcgggcccgggCgGCUcCGGCC-GCGUCa -3' miRNA: 3'- aUAGCUGCA----------GgCGA-GCCGGuCGCAGa -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 10305 | 0.68 | 0.779509 |
Target: 5'- cGUCGGCGagagacUCCGacgaCUCGGCCGuCGUCg -3' miRNA: 3'- aUAGCUGC------AGGC----GAGCCGGUcGCAGa -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 104260 | 0.68 | 0.779509 |
Target: 5'- -cUCGGgcagCCGCUCGGCCGGCa--- -3' miRNA: 3'- auAGCUgca-GGCGAGCCGGUCGcaga -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 182081 | 0.68 | 0.779509 |
Target: 5'- gGUCGGCcaCCGC-CaGCCAGCGUUc -3' miRNA: 3'- aUAGCUGcaGGCGaGcCGGUCGCAGa -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 193805 | 0.68 | 0.779509 |
Target: 5'- --cCGGCGcCCGCUCGucuggcGCCGacGCGUCg -3' miRNA: 3'- auaGCUGCaGGCGAGC------CGGU--CGCAGa -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 71848 | 0.68 | 0.770458 |
Target: 5'- cGUCGACGggaccucaCCGC-CGGCCAGacuccgcucgaCGUCg -3' miRNA: 3'- aUAGCUGCa-------GGCGaGCCGGUC-----------GCAGa -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 18634 | 0.68 | 0.770458 |
Target: 5'- --cCGACGcCCGCUCcGCCGGCa--- -3' miRNA: 3'- auaGCUGCaGGCGAGcCGGUCGcaga -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 112268 | 0.68 | 0.761291 |
Target: 5'- --cCGGCGUCuCGUccUCGGCCuccGUGUCg -3' miRNA: 3'- auaGCUGCAG-GCG--AGCCGGu--CGCAGa -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 143101 | 0.68 | 0.752016 |
Target: 5'- --gCGGCGUguuccagccCCGCUCGGCCguGGCG-Ca -3' miRNA: 3'- auaGCUGCA---------GGCGAGCCGG--UCGCaGa -5' |
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10790 | 5' | -58.5 | NC_002794.1 | + | 188352 | 0.68 | 0.742642 |
Target: 5'- cGUCG-CGcCCGUcCGGCCGGCGg-- -3' miRNA: 3'- aUAGCuGCaGGCGaGCCGGUCGCaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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