miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10790 5' -58.5 NC_002794.1 + 10305 0.68 0.779509
Target:  5'- cGUCGGCGagagacUCCGacgaCUCGGCCGuCGUCg -3'
miRNA:   3'- aUAGCUGC------AGGC----GAGCCGGUcGCAGa -5'
10790 5' -58.5 NC_002794.1 + 12183 0.66 0.838952
Target:  5'- --cCGACG-CCGCcgCGGCCGGgCGcCg -3'
miRNA:   3'- auaGCUGCaGGCGa-GCCGGUC-GCaGa -5'
10790 5' -58.5 NC_002794.1 + 14521 0.75 0.393697
Target:  5'- -cUCGugGcgCCGCUCGGCCacGGCGcUCUc -3'
miRNA:   3'- auAGCugCa-GGCGAGCCGG--UCGC-AGA- -5'
10790 5' -58.5 NC_002794.1 + 14768 0.69 0.694578
Target:  5'- cGUCGAgG-CCGCUgaGGCCGGCGa-- -3'
miRNA:   3'- aUAGCUgCaGGCGAg-CCGGUCGCaga -5'
10790 5' -58.5 NC_002794.1 + 18634 0.68 0.770458
Target:  5'- --cCGACGcCCGCUCcGCCGGCa--- -3'
miRNA:   3'- auaGCUGCaGGCGAGcCGGUCGcaga -5'
10790 5' -58.5 NC_002794.1 + 18795 0.68 0.742642
Target:  5'- -cUCGACGgccCCGC-CGGCCAacGgGUCg -3'
miRNA:   3'- auAGCUGCa--GGCGaGCCGGU--CgCAGa -5'
10790 5' -58.5 NC_002794.1 + 19512 0.66 0.861922
Target:  5'- gGUCG-CG-CCGCUCGgagcGCCGGCG-Cg -3'
miRNA:   3'- aUAGCuGCaGGCGAGC----CGGUCGCaGa -5'
10790 5' -58.5 NC_002794.1 + 26631 0.71 0.593762
Target:  5'- cGUCcGCGUCCGCgcacccggacggCGGCCGGCucGUCg -3'
miRNA:   3'- aUAGcUGCAGGCGa-----------GCCGGUCG--CAGa -5'
10790 5' -58.5 NC_002794.1 + 30558 0.66 0.854452
Target:  5'- gAUCcGCGcCCGCUCGuucGUCAGCGUg- -3'
miRNA:   3'- aUAGcUGCaGGCGAGC---CGGUCGCAga -5'
10790 5' -58.5 NC_002794.1 + 35507 0.66 0.861922
Target:  5'- gGUgGugG-CCGC-CGuGcCCAGCGUCUa -3'
miRNA:   3'- aUAgCugCaGGCGaGC-C-GGUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 36483 0.67 0.787549
Target:  5'- -cUCGGCGUUcucguacaggcagCGCaccaccUCGGCCAGCGUg- -3'
miRNA:   3'- auAGCUGCAG-------------GCG------AGCCGGUCGCAga -5'
10790 5' -58.5 NC_002794.1 + 38071 0.73 0.457139
Target:  5'- -cUCGACGUCCGuCUCGGacacggucagcgcgaCCGGCGUg- -3'
miRNA:   3'- auAGCUGCAGGC-GAGCC---------------GGUCGCAga -5'
10790 5' -58.5 NC_002794.1 + 48875 0.67 0.797232
Target:  5'- cGUCGGCGgCCagGUggcaGGCCAGCGUUg -3'
miRNA:   3'- aUAGCUGCaGG--CGag--CCGGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 49112 0.66 0.854452
Target:  5'- -cUCGGCGUCCuGCaccgggacCGGCCGGagGUCg -3'
miRNA:   3'- auAGCUGCAGG-CGa-------GCCGGUCg-CAGa -5'
10790 5' -58.5 NC_002794.1 + 49410 0.66 0.869197
Target:  5'- --aCGGCGgCCGCggcggcggCGGCCgucacGGCGUCc -3'
miRNA:   3'- auaGCUGCaGGCGa-------GCCGG-----UCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 52916 0.67 0.814393
Target:  5'- cGUCGcCGccgccgUCGCUCGGCCGGCa--- -3'
miRNA:   3'- aUAGCuGCa-----GGCGAGCCGGUCGcaga -5'
10790 5' -58.5 NC_002794.1 + 53243 0.67 0.788436
Target:  5'- -cUCGGC--CCGC-CGcGCCGGCGUCg -3'
miRNA:   3'- auAGCUGcaGGCGaGC-CGGUCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 53593 0.7 0.655193
Target:  5'- gUGUCGGCGUCgGCgucaccgGGCCgccgcAGCGUCg -3'
miRNA:   3'- -AUAGCUGCAGgCGag-----CCGG-----UCGCAGa -5'
10790 5' -58.5 NC_002794.1 + 53964 0.75 0.383154
Target:  5'- -cUCGcGCGUCCGCUccguccggcugcccCGcGCCAGCGUCUc -3'
miRNA:   3'- auAGC-UGCAGGCGA--------------GC-CGGUCGCAGA- -5'
10790 5' -58.5 NC_002794.1 + 57406 0.73 0.480701
Target:  5'- --cCGGCGcCCGCgUGGCCGGCGUgCUg -3'
miRNA:   3'- auaGCUGCaGGCGaGCCGGUCGCA-GA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.